View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18237_high_1 (Length: 575)

Name: NF18237_high_1
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18237_high_1
NF18237_high_1
[»] chr7 (8 HSPs)
chr7 (10-559)||(6824224-6824762)
chr7 (515-546)||(10893877-10893908)
chr7 (517-546)||(18750896-18750925)
chr7 (513-546)||(43160504-43160537)
chr7 (514-547)||(46550798-46550831)
chr7 (514-546)||(650539-650571)
chr7 (514-546)||(37610056-37610088)
chr7 (514-546)||(37776002-37776034)
[»] chr6 (6 HSPs)
chr6 (515-553)||(34547214-34547252)
chr6 (505-546)||(18803267-18803308)
chr6 (508-546)||(10335377-10335415)
chr6 (513-546)||(10158004-10158037)
chr6 (513-546)||(29449701-29449734)
chr6 (513-546)||(34057974-34058007)
[»] chr1 (14 HSPs)
chr1 (513-547)||(50195471-50195505)
chr1 (509-543)||(32637858-32637892)
chr1 (517-547)||(36041368-36041398)
chr1 (508-546)||(43609819-43609857)
chr1 (28-86)||(47973167-47973225)
chr1 (518-547)||(23621067-23621096)
chr1 (518-547)||(23652412-23652441)
chr1 (518-547)||(23737846-23737875)
chr1 (513-546)||(26462651-26462684)
chr1 (513-546)||(31667445-31667478)
chr1 (513-553)||(498403-498443)
chr1 (514-546)||(18556033-18556065)
chr1 (514-546)||(26390140-26390172)
chr1 (515-547)||(26777385-26777417)
[»] chr4 (12 HSPs)
chr4 (513-546)||(683072-683105)
chr4 (514-546)||(9988706-9988738)
chr4 (508-543)||(19262925-19262960)
chr4 (513-547)||(21732366-21732400)
chr4 (518-547)||(1336654-1336683)
chr4 (515-552)||(45267883-45267920)
chr4 (517-546)||(46632847-46632876)
chr4 (518-546)||(8457945-8457973)
chr4 (515-547)||(10435087-10435119)
chr4 (514-546)||(29388373-29388405)
chr4 (514-546)||(45615422-45615454)
chr4 (514-546)||(51383995-51384027)
[»] chr8 (10 HSPs)
chr8 (514-546)||(32691763-32691795)
chr8 (513-547)||(10002169-10002203)
chr8 (514-547)||(1586627-1586660)
chr8 (509-546)||(8917538-8917575)
chr8 (513-546)||(16994060-16994093)
chr8 (513-546)||(31548299-31548332)
chr8 (513-546)||(31681836-31681869)
chr8 (511-547)||(3424695-3424731)
chr8 (514-546)||(6205233-6205265)
chr8 (508-540)||(29481384-29481416)
[»] chr3 (3 HSPs)
chr3 (514-546)||(1502594-1502626)
chr3 (515-553)||(47678854-47678892)
chr3 (514-546)||(4946211-4946243)
[»] chr5 (5 HSPs)
chr5 (514-553)||(4991153-4991192)
chr5 (513-546)||(10009846-10009879)
chr5 (514-547)||(27253304-27253337)
chr5 (518-546)||(645352-645380)
chr5 (515-543)||(29200807-29200835)
[»] chr2 (5 HSPs)
chr2 (508-546)||(26787739-26787777)
chr2 (523-553)||(44605425-44605455)
chr2 (513-553)||(9626954-9626992)
chr2 (508-544)||(14373428-14373464)
chr2 (517-553)||(39017350-39017386)
[»] scaffold0050 (1 HSPs)
scaffold0050 (514-546)||(59145-59177)


Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 10 - 559
Target Start/End: Complemental strand, 6824762 - 6824224
Alignment:
Q  10 aagaaaatcaataatgtgtatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatccctccaaacgttattaacattag 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  6824762 aagaaaatcaataatgtgtatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatccctcctaacgttattaacattag 6824663  T
Q  110 ttacgagtatatttggagaaaaaatgataaatgtatttagtaatttgaaatgcaatttatagttaggtagaatatgctctttcccaaggacactaacatt 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6824662 ttacgagtatatttggagaaaaaatgataaatgtatttagtaatttgaaatgcaatttatagttaggtagaatatgctctttcccaaggacactaacatt 6824563  T
Q  210 aggggacaatgatagaaaattcataatcaatcatttcaattagattttggacaccaacattaggttactatt----ctaactgtatcgaaattataaaca 305  Q
    |||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||| |||||    
T  6824562 aggg-acaaggatagtaaattcataatcaatcatttcaattagattttggacaccaacattaggttactatgactcctaactgtatcgaaattacaaaca 6824464  T
Q  306 catatgtaagtgtttgttttgtgagtaattttattgaccaatctaactaacaaaagacaaattgaatgatcaaactaaataacaaaagt-atgttcatgt 404  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6824463 catatgtaagtgtttgttttgtgagtaattttatggaccaatctaactaacaaaagacaaattgaatgatcaaactaaataacaaaagtcatgttcatgt 6824364  T
Q  405 atgtttttgtaattttgatacatgcaaagattatagcgaaaacacatcacaca-ttaagtaacaaaatgacttttcagcgtgtctggtgtctactaacat 503  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||| |||||               
T  6824363 atgtttttgtaattttgatacatgcaaagattatagcgaaaacacatcacacatttaagtaacaaaatgactttttagcatgtgtggtg----------- 6824275  T
Q  504 ccataacatcgacacatgtgattacattcaattatgtcatttttcaaattgtaacc 559  Q
         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6824274 -----acatcgacacatgtgattacattcaattatgtcatttttcaaattgtaacc 6824224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 515 - 546
Target Start/End: Original strand, 10893877 - 10893908
Alignment:
Q  515 acacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||||||||||||||||    
T  10893877 acacatgtgattacattcaattatgtcatttt 10893908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 546
Target Start/End: Complemental strand, 18750925 - 18750896
Alignment:
Q  517 acatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||||||||||||||    
T  18750925 acatgtgattacattcaattatgtcatttt 18750896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 43160537 - 43160504
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||| |||||    
T  43160537 cgacacatgtgattacattcaattatgttatttt 43160504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 547
Target Start/End: Original strand, 46550798 - 46550831
Alignment:
Q  514 gacacatgtgattacattcaattatgtcattttt 547  Q
    |||||||||||||||| |||||||||||||||||    
T  46550798 gacacatgtgattacactcaattatgtcattttt 46550831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Complemental strand, 650571 - 650539
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||| |||||||||||||||||||    
T  650571 gacacatgtgattgcattcaattatgtcatttt 650539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 37610056 - 37610088
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||| ||||||||||||    
T  37610056 gacacatgtgattacattcagttatgtcatttt 37610088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Complemental strand, 37776034 - 37776002
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||| ||||||||||||||    
T  37776034 gacacatgtgattacatttaattatgtcatttt 37776002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 515 - 553
Target Start/End: Original strand, 34547214 - 34547252
Alignment:
Q  515 acacatgtgattacattcaattatgtcatttttcaaatt 553  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  34547214 acacatgtgattacattaaattatgtcatttttcaaatt 34547252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 505 - 546
Target Start/End: Complemental strand, 18803308 - 18803267
Alignment:
Q  505 cataacatcgacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  18803308 cataacattgacacatgtgattacattcaattatgtaatttt 18803267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 546
Target Start/End: Original strand, 10335377 - 10335415
Alignment:
Q  508 aacatcgacacatgtgattacattcaattatgtcatttt 546  Q
    |||| |||||||| |||||||||||||||||||||||||    
T  10335377 aacaccgacacatctgattacattcaattatgtcatttt 10335415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 10158037 - 10158004
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||| ||||||||||||||    
T  10158037 cgacacatgtgattacattgaattatgtcatttt 10158004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 29449734 - 29449701
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||| |||||    
T  29449734 cgacacatgtgattacattcaattatgttatttt 29449701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 34058007 - 34057974
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||| ||||||||||||||||    
T  34058007 cgacacatgtgattacagtcaattatgtcatttt 34057974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 50195471 - 50195505
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcattttt 547  Q
    |||||||||||||||||||||||||||||||||||    
T  50195471 cgacacatgtgattacattcaattatgtcattttt 50195505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 543
Target Start/End: Complemental strand, 32637892 - 32637858
Alignment:
Q  509 acatcgacacatgtgattacattcaattatgtcat 543  Q
    |||| ||||||||||||||||||||||||||||||    
T  32637892 acattgacacatgtgattacattcaattatgtcat 32637858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 517 - 547
Target Start/End: Complemental strand, 36041398 - 36041368
Alignment:
Q  517 acatgtgattacattcaattatgtcattttt 547  Q
    |||||||||||||||||||||||||||||||    
T  36041398 acatgtgattacattcaattatgtcattttt 36041368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 546
Target Start/End: Original strand, 43609819 - 43609857
Alignment:
Q  508 aacatcgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||| ||||||||||||||||||||||||||| |||||    
T  43609819 aacatggacacatgtgattacattcaattatgttatttt 43609857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 28 - 86
Target Start/End: Complemental strand, 47973225 - 47973167
Alignment:
Q  28 tatggatgttcataaaataccaatttatacatgaatgtgttcaactctaatttctcatc 86  Q
    |||||| |||| |||||||||| ||| || |||| ||||||||||||| ||||||||||    
T  47973225 tatggaagttcgtaaaataccattttgtatatgagtgtgttcaactctgatttctcatc 47973167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Original strand, 23621067 - 23621096
Alignment:
Q  518 catgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||||||||||||||    
T  23621067 catgtgattacattcaattatgtcattttt 23621096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Original strand, 23652412 - 23652441
Alignment:
Q  518 catgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||||||||||||||    
T  23652412 catgtgattacattcaattatgtcattttt 23652441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Original strand, 23737846 - 23737875
Alignment:
Q  518 catgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||||||||||||||    
T  23737846 catgtgattacattcaattatgtcattttt 23737875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Original strand, 26462651 - 26462684
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||| |||||||    
T  26462651 cgacacatgtgattacattcaattatttcatttt 26462684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 31667478 - 31667445
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||| ||||||||||||||    
T  31667478 cgacacatgtgattacatttaattatgtcatttt 31667445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 553
Target Start/End: Original strand, 498403 - 498443
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttttcaaatt 553  Q
    ||||| |||| |||||||| |||||||||||||||||||||    
T  498403 cgacaaatgtaattacattgaattatgtcatttttcaaatt 498443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 18556033 - 18556065
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||| ||||||||||||||||    
T  18556033 gacacatgtgattacagtcaattatgtcatttt 18556065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 26390140 - 26390172
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    ||||| |||||||||||||||||||||||||||    
T  26390140 gacacttgtgattacattcaattatgtcatttt 26390172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 547
Target Start/End: Original strand, 26777385 - 26777417
Alignment:
Q  515 acacatgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||||||| |||||||||    
T  26777385 acacatgtgattacattcaattaagtcattttt 26777417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 683105 - 683072
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||||||||||||||||||    
T  683105 cgacacatgtgattacattcaattatgtcatttt 683072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 9988706 - 9988738
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||||||||    
T  9988706 gacacatgtgattacattcaattatgtcatttt 9988738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 508 - 543
Target Start/End: Original strand, 19262925 - 19262960
Alignment:
Q  508 aacatcgacacatgtgattacattcaattatgtcat 543  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19262925 aacattgacacatgtgattacattcaattatgtcat 19262960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 21732366 - 21732400
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||| |||||||||||||||||    
T  21732366 cgacacatgtgattacaatcaattatgtcattttt 21732400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 518 - 547
Target Start/End: Original strand, 1336654 - 1336683
Alignment:
Q  518 catgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||||||||||||||    
T  1336654 catgtgattacattcaattatgtcattttt 1336683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 515 - 552
Target Start/End: Complemental strand, 45267920 - 45267883
Alignment:
Q  515 acacatgtgattacattcaattatgtcatttttcaaat 552  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  45267920 acacatatgattacattcaattatgtcatttttaaaat 45267883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 517 - 546
Target Start/End: Original strand, 46632847 - 46632876
Alignment:
Q  517 acatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||||||||||||||    
T  46632847 acatgtgattacattcaattatgtcatttt 46632876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 546
Target Start/End: Complemental strand, 8457973 - 8457945
Alignment:
Q  518 catgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||||    
T  8457973 catgtgattacattcaattatgtcatttt 8457945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 547
Target Start/End: Original strand, 10435087 - 10435119
Alignment:
Q  515 acacatgtgattacattcaattatgtcattttt 547  Q
    |||||||||||||||||||||| ||||||||||    
T  10435087 acacatgtgattacattcaattttgtcattttt 10435119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 29388373 - 29388405
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||| ||||||||||||||||||||||||||||    
T  29388373 gacatatgtgattacattcaattatgtcatttt 29388405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 45615422 - 45615454
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||| |||||||||||||||||    
T  45615422 gacacatgtgattacgttcaattatgtcatttt 45615454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 51383995 - 51384027
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||||||||| |||||||    
T  51383995 gacacatgtgattacattcaattatttcatttt 51384027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 546
Target Start/End: Complemental strand, 32691795 - 32691763
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||||||||    
T  32691795 gacacatgtgattacattcaattatgtcatttt 32691763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 513 - 547
Target Start/End: Original strand, 10002169 - 10002203
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||| |||||||||||||||    
T  10002169 cgacacatgtgattacattaaattatgtcattttt 10002203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 547
Target Start/End: Complemental strand, 1586660 - 1586627
Alignment:
Q  514 gacacatgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||| ||||||||||||||||||    
T  1586660 gacacatgtgattacgttcaattatgtcattttt 1586627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 546
Target Start/End: Original strand, 8917538 - 8917575
Alignment:
Q  509 acatcgacacatgtgattacattcaattatgtcatttt 546  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  8917538 acatggacacatctgattacattcaattatgtcatttt 8917575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 16994093 - 16994060
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||| |||||||||    
T  16994093 cgacacatgtgattacattcaattctgtcatttt 16994060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Original strand, 31548299 - 31548332
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||| ||||||||||||||    
T  31548299 cgacacatgtgattacattgaattatgtcatttt 31548332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Original strand, 31681836 - 31681869
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||| |||||||||||||||||||    
T  31681836 cgacacatgtgatttcattcaattatgtcatttt 31681869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 547
Target Start/End: Original strand, 3424695 - 3424731
Alignment:
Q  511 atcgacacatgtgattacattcaattatgtcattttt 547  Q
    ||||||||||||||||||||| |||||| ||||||||    
T  3424695 atcgacacatgtgattacatttaattatatcattttt 3424731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 6205233 - 6205265
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||| ||||||||||||||||||||||||    
T  6205233 gacacatgcgattacattcaattatgtcatttt 6205265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 540
Target Start/End: Original strand, 29481384 - 29481416
Alignment:
Q  508 aacatcgacacatgtgattacattcaattatgt 540  Q
    ||||| |||||||||||||||||||||||||||    
T  29481384 aacatagacacatgtgattacattcaattatgt 29481416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 514 - 546
Target Start/End: Complemental strand, 1502626 - 1502594
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||||||||    
T  1502626 gacacatgtgattacattcaattatgtcatttt 1502594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 515 - 553
Target Start/End: Complemental strand, 47678892 - 47678854
Alignment:
Q  515 acacatgtgattacattcaattatgtcatttttcaaatt 553  Q
    |||||| ||||||||||||||||||||||||||| ||||    
T  47678892 acacatatgattacattcaattatgtcatttttcgaatt 47678854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Original strand, 4946211 - 4946243
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||||||||| |||||||    
T  4946211 gacacatgtgattacattcaattatatcatttt 4946243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 514 - 553
Target Start/End: Original strand, 4991153 - 4991192
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttttcaaatt 553  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  4991153 gacacatgtgattacattcaattaattcatttttcaaatt 4991192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 546
Target Start/End: Complemental strand, 10009879 - 10009846
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttt 546  Q
    ||||||||||||||||||| ||||||||||||||    
T  10009879 cgacacatgtgattacattgaattatgtcatttt 10009846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 547
Target Start/End: Complemental strand, 27253337 - 27253304
Alignment:
Q  514 gacacatgtgattacattcaattatgtcattttt 547  Q
    |||||||||||||||||||||||||| |||||||    
T  27253337 gacacatgtgattacattcaattatgacattttt 27253304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 518 - 546
Target Start/End: Complemental strand, 645380 - 645352
Alignment:
Q  518 catgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||||    
T  645380 catgtgattacattcaattatgtcatttt 645352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 515 - 543
Target Start/End: Original strand, 29200807 - 29200835
Alignment:
Q  515 acacatgtgattacattcaattatgtcat 543  Q
    |||||||||||||||||||||||||||||    
T  29200807 acacatgtgattacattcaattatgtcat 29200835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 508 - 546
Target Start/End: Original strand, 26787739 - 26787777
Alignment:
Q  508 aacatcgacacatgtgattacattcaattatgtcatttt 546  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  26787739 aacaacgacacatgtgattacattcaataatgtcatttt 26787777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 523 - 553
Target Start/End: Complemental strand, 44605455 - 44605425
Alignment:
Q  523 gattacattcaattatgtcatttttcaaatt 553  Q
    |||||||||||||||||||||||||||||||    
T  44605455 gattacattcaattatgtcatttttcaaatt 44605425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 513 - 553
Target Start/End: Complemental strand, 9626992 - 9626954
Alignment:
Q  513 cgacacatgtgattacattcaattatgtcatttttcaaatt 553  Q
    |||||||||||  ||||||||||||||||||||||||||||    
T  9626992 cgacacatgtg--tacattcaattatgtcatttttcaaatt 9626954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 508 - 544
Target Start/End: Original strand, 14373428 - 14373464
Alignment:
Q  508 aacatcgacacatgtgattacattcaattatgtcatt 544  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  14373428 aacaccgacacatgtgattacattgaattatgtcatt 14373464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 517 - 553
Target Start/End: Complemental strand, 39017386 - 39017350
Alignment:
Q  517 acatgtgattacattcaattatgtcatttttcaaatt 553  Q
    |||| |||||||||||||||||| |||||||||||||    
T  39017386 acatatgattacattcaattatgccatttttcaaatt 39017350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 514 - 546
Target Start/End: Complemental strand, 59177 - 59145
Alignment:
Q  514 gacacatgtgattacattcaattatgtcatttt 546  Q
    |||||||||||||||||||||||||||| ||||    
T  59177 gacacatgtgattacattcaattatgtcgtttt 59145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University