View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_high_11 (Length: 393)
Name: NF18237_high_11
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 48364375 - 48364741
Alignment:
| Q |
19 |
cttaaatgcatagaatcaatttctcaaaatgaacacagcattcgaattttacatatttgctaaaccacatatacataccaaatttatcttaaagaaaatt |
118 |
Q |
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| T |
48364375 |
cttaaatgcatagaatcaatttctcaaaatgaacacagcattcgaattttacatatttgctaaaccacatatacataccaaatttatcttaaagaaaatt |
48364474 |
T |
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| Q |
119 |
atgtgccactaatataaaatatgacgacccaaatgcccatataaaacactgaacatgtacccattttgcatttcatgtaaactatccatccgcattaagg |
218 |
Q |
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| T |
48364475 |
atgtgccactaatataaaatatgacgacccaaatgcccatataaaacactgaacatgtacccattttgcatttcatgtaaactatccatccgcattaagg |
48364574 |
T |
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| Q |
219 |
taaggactggtcatatagtgagagtgaaatatgatgcagagtactattgaagttagagtgagatactctttcttttttcagtagaaacgtactaagcaag |
318 |
Q |
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| T |
48364575 |
taaggactggtcatatagtgagagtgaaatatgatgcagagtactattgaagttagagtgagatactctttcttttttcagtagaaacgtactaagcaag |
48364674 |
T |
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| Q |
319 |
agtagtgtcataaatatgcatgaattgcaggtcccctgtcacactacaataaatttgtcttcatctc |
385 |
Q |
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| T |
48364675 |
agtagtgtcataaatatgcatgaattgcaggtcccctgtcacactacaataaatttgtctccatctc |
48364741 |
T |
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