View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_high_12 (Length: 367)
Name: NF18237_high_12
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 120 - 243
Target Start/End: Original strand, 167262 - 167384
Alignment:
| Q |
120 |
atcaagtgattaatgactaaatattcaccacactgagattaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctaccaat |
219 |
Q |
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| T |
167262 |
atcaagtgattaatgactaaatattcaccgcaca-aggttaataagtggagaatgaattcgagattgcacatacaaattatttgtaatgtctctatcaat |
167360 |
T |
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| Q |
220 |
caagttatgttcactaagacaatg |
243 |
Q |
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| T |
167361 |
cgagttatgttcactaggacaatg |
167384 |
T |
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Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 33 - 110
Target Start/End: Complemental strand, 2306724 - 2306647
Alignment:
| Q |
33 |
gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttc |
110 |
Q |
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| T |
2306724 |
gcatttggtggaatacacgctatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttc |
2306647 |
T |
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Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 13332752 - 13332834
Alignment:
| Q |
30 |
gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
112 |
Q |
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| T |
13332752 |
gtagcatttggtggaatacaagccatcgtatagtgtaattcgtattttccgtggattcagtttcgtgggaaatggcatttccc |
13332834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 21538187 - 21538269
Alignment:
| Q |
30 |
gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
112 |
Q |
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| T |
21538187 |
gtagcatttggtggaatacacgccagcgtatattgtaattcgtattttccgtggattcagtttcgtgggaaatggtatttccc |
21538269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 112
Target Start/End: Complemental strand, 37633362 - 37633313
Alignment:
| Q |
63 |
tgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
112 |
Q |
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| T |
37633362 |
tgtaattcgtatttcccgtgaattcactttcgtaggatatggcatttccc |
37633313 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 35840792 - 35840875
Alignment:
| Q |
30 |
gtagcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaat-ggcatttccc |
112 |
Q |
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| T |
35840792 |
gtagcattcggtggaatacatgccatcgtatagtataattcgtattttccgtggattcagtttcgtgggaaatgggcatttccc |
35840875 |
T |
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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 4088006 - 4087928
Alignment:
| Q |
33 |
gcatttggtggaatacacgccatggtataatgtaattcgtatttcccgtagattcagtttcgtgggaaatggcatttccc |
112 |
Q |
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| T |
4088006 |
gcatttggtggaatacacgccatcgtattgtgtaattcgtatttcccttgga-tcagtttagtaggaaatgatatttccc |
4087928 |
T |
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