View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_high_15 (Length: 266)
Name: NF18237_high_15
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 13 - 208
Target Start/End: Original strand, 8201513 - 8201708
Alignment:
| Q |
13 |
catcacaaaatagactaggctgagataataattcaaaggtcacggtctgtcttatttatctaatacaggaccaagatcaatcctaaccttttgaaattct |
112 |
Q |
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| T |
8201513 |
catcacaaaatagactaggctgagataataattcaaaggtcacggtctgtcttatttatctaatacaggaccaagatcaatcctaaccttttgaaattct |
8201612 |
T |
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| Q |
113 |
ggtataacacaaaagtctcttaaaagccnnnnnnngcacaacggtcttcaaataagtcataaattttcggttcaataaacttctcaagtcttttat |
208 |
Q |
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| T |
8201613 |
ggtataacacaaaagtctcttaaaagcctttttttgcacaacggtcttcaaataagtcataaattttcagttcaataaacttcttaagtcttttat |
8201708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 42358657 - 42358758
Alignment:
| Q |
155 |
ggtcttcaaataagtcataaattttcggttcaataaactt-----ctcaagtcttttatgcaggccaatatgcctaaatctttaaaagggtcagtatgtg |
249 |
Q |
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|||||||||||||| ||||| |||||| |||||||||||| |||||||||| |||||||| | | |||| ||||||||||||||||| ||||| || |
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| T |
42358657 |
ggtcttcaaataagacataacttttcgtttcaataaacttatagcctcaagtcttatatgcaggacgacatgcataaatctttaaaagggtaagtatatg |
42358756 |
T |
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| Q |
250 |
at |
251 |
Q |
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|| |
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| T |
42358757 |
at |
42358758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 138
Target Start/End: Original strand, 42358574 - 42358657
Alignment:
| Q |
56 |
ggtctgtcttatttatc-taatacaggaccaagatcaatcctaaccttttgaaattctggtataacacaaaagtctcttaaaag |
138 |
Q |
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| T |
42358574 |
ggtctgtcttatttataataatacagggctaagatcaatcctacccatttgaaattctagcataacataaaagtctctaaaaag |
42358657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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