View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_high_3 (Length: 535)
Name: NF18237_high_3
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_high_3 |
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| [»] scaffold0160 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 287
Target Start/End: Complemental strand, 9546250 - 9545964
Alignment:
| Q |
1 |
ctgaaaccgttgaagaaggtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcaca |
100 |
Q |
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| T |
9546250 |
ctgaaaccgttgaagaaggtacgaggaagatacaaatgcgacacgtgtaacaaagtgtttcgttcatatcaagcactaggtggacacagagcgagtcaca |
9546151 |
T |
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| Q |
101 |
agaaaaataaacaagttgcagaaagtggtggtgattattcaatttcacaacaacatgaaaaaattaacattgnnnnnnntatcaatgttactgaaaagaa |
200 |
Q |
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| T |
9546150 |
agaaaaataaacaagttgcagaaagtggtggtgattattcaatttcacaacatcatgaaaaaattaacattgaaaaaaatatcaatgttagtgaaaagaa |
9546051 |
T |
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| Q |
201 |
aattcatgaatgtccaatttgttttagagaattttcttcaggtcaagcactaggtggacataggagaacacataatattggattcgg |
287 |
Q |
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| T |
9546050 |
aattcatgaatgtccaatttgttttagagaatttgcttcaggtcaagcactaggtggacataggagaacacataatattggattcgg |
9545964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 327 - 516
Target Start/End: Complemental strand, 9545930 - 9545741
Alignment:
| Q |
327 |
aacaacaatggttagaaggaacgtcgaggttgctcgagtttccgcgaatgttggagatagtttgttagatctaaattttcctgctccgatggatgaagat |
426 |
Q |
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| T |
9545930 |
aacaacaatggttagaaggaacgtcaaggttgctcgagtttccgcgaatgttggagatagtttgttagatctaaattttcctgctccgatggacgaagat |
9545831 |
T |
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| Q |
427 |
gaagatgaacatgaagacgatggtgatgacgatgttagtcaagttgaaggttctgctgtttccgatgctgaatttgtcaaacctcattaa |
516 |
Q |
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| T |
9545830 |
gaagatgaacatgaagacaatggtgatgacgatgttagtcaagttgaaggttctgctgtttccgatgctgaatttgtcaaacctcattaa |
9545741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0160 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0160
Description:
Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 192 - 273
Target Start/End: Complemental strand, 19675 - 19594
Alignment:
| Q |
192 |
tgaaaagaaaattcatgaatgtccaatttgttttagagaattttcttcaggtcaagcactaggtggacataggagaacacat |
273 |
Q |
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| T |
19675 |
tgaaaagaaagttcatgaatgtccggtatgttttcgagtatttaattcgggtcaagcacttggtggacacaaaagaacacat |
19594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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