View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18237_low_10 (Length: 476)

Name: NF18237_low_10
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18237_low_10
NF18237_low_10
[»] chr3 (14 HSPs)
chr3 (154-257)||(1561253-1561356)
chr3 (154-243)||(22650391-22650482)
chr3 (183-257)||(521791-521865)
chr3 (208-251)||(36517618-36517661)
chr3 (182-251)||(20912271-20912340)
chr3 (189-257)||(38176422-38176490)
chr3 (189-251)||(31788409-31788471)
chr3 (215-257)||(34624535-34624577)
chr3 (182-251)||(23643005-23643074)
chr3 (182-257)||(45166324-45166399)
chr3 (181-251)||(52546846-52546916)
chr3 (182-243)||(50612900-50612961)
chr3 (92-132)||(22356143-22356183)
chr3 (215-251)||(51297084-51297120)
[»] chr2 (15 HSPs)
chr2 (182-257)||(13686091-13686166)
chr2 (182-256)||(19899018-19899092)
chr2 (182-257)||(28716343-28716418)
chr2 (182-251)||(14941013-14941082)
chr2 (182-251)||(3810295-3810364)
chr2 (156-235)||(3377004-3377084)
chr2 (156-251)||(29689226-29689315)
chr2 (182-251)||(45093175-45093244)
chr2 (183-251)||(41464926-41464994)
chr2 (206-251)||(28429385-28429430)
chr2 (189-257)||(25415011-25415079)
chr2 (190-257)||(42263929-42263997)
chr2 (189-251)||(40126533-40126595)
chr2 (189-238)||(35323508-35323557)
chr2 (182-223)||(35676297-35676338)
[»] chr4 (10 HSPs)
chr4 (182-251)||(18375417-18375486)
chr4 (182-257)||(41878614-41878689)
chr4 (182-257)||(54358210-54358285)
chr4 (182-251)||(17847568-17847637)
chr4 (208-251)||(4512215-4512258)
chr4 (174-257)||(26179228-26179311)
chr4 (212-251)||(24683180-24683219)
chr4 (212-251)||(47281588-47281627)
chr4 (190-246)||(23348147-23348203)
chr4 (182-257)||(37674026-37674101)
[»] chr5 (16 HSPs)
chr5 (182-257)||(4391871-4391946)
chr5 (182-257)||(40925933-40926008)
chr5 (212-257)||(38614236-38614281)
chr5 (190-257)||(34286691-34286759)
chr5 (200-251)||(3456856-3456907)
chr5 (182-251)||(37093937-37094006)
chr5 (211-251)||(6614301-6614341)
chr5 (157-235)||(28434321-28434399)
chr5 (201-251)||(31644730-31644780)
chr5 (182-257)||(5481450-5481525)
chr5 (190-243)||(228135-228189)
chr5 (190-248)||(32891281-32891339)
chr5 (215-249)||(35672369-35672403)
chr5 (182-251)||(8692612-8692681)
chr5 (212-257)||(11739275-11739320)
chr5 (206-251)||(29223567-29223612)
[»] chr8 (10 HSPs)
chr8 (154-251)||(11643387-11643485)
chr8 (183-257)||(36473076-36473150)
chr8 (182-257)||(15561940-15562015)
chr8 (182-257)||(33888946-33889021)
chr8 (211-257)||(4851831-4851877)
chr8 (205-251)||(1005693-1005739)
chr8 (199-257)||(39112746-39112804)
chr8 (210-251)||(41322633-41322674)
chr8 (183-243)||(11653738-11653798)
chr8 (199-257)||(2001745-2001803)
[»] chr6 (4 HSPs)
chr6 (184-251)||(7646802-7646869)
chr6 (177-257)||(29487536-29487616)
chr6 (182-257)||(25935606-25935681)
chr6 (212-256)||(28898438-28898482)
[»] chr7 (6 HSPs)
chr7 (190-251)||(8307626-8307687)
chr7 (190-251)||(27425787-27425848)
chr7 (192-251)||(17611946-17612005)
chr7 (184-257)||(23991978-23992051)
chr7 (183-251)||(42195481-42195549)
chr7 (212-251)||(22326962-22327001)
[»] chr1 (11 HSPs)
chr1 (211-257)||(4624443-4624489)
chr1 (184-257)||(34475997-34476070)
chr1 (182-251)||(47550895-47550964)
chr1 (182-249)||(9098595-9098662)
chr1 (182-257)||(31032723-31032798)
chr1 (215-257)||(24135851-24135893)
chr1 (203-257)||(34808034-34808088)
chr1 (201-257)||(45010297-45010353)
chr1 (190-257)||(1270269-1270336)
chr1 (182-249)||(16254960-16255027)
chr1 (211-257)||(29095577-29095623)
[»] scaffold0002 (1 HSPs)
scaffold0002 (190-257)||(492764-492832)


Alignment Details
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 1561253 - 1561356
Alignment:
Q  154 ggaaaatgctatttccaacaaaggaaatgcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgc 253  Q
    ||||||||||||||||| | ||||||||| |||| ||||||||||||||||| ||| ||||||| |||||||||||||||||||| |||||||||||| |    
T  1561253 ggaaaatgctatttccagcgaaggaaatgaatcaagaattttttcagacacagctgacaagtttcaattgcatgatttatttgttcacttcctatttttc 1561352  T
Q  254 agcc 257  Q
    ||||    
T  1561353 agcc 1561356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 22650391 - 22650482
Alignment:
Q  154 ggaaaatgctatttccaacaaaggaaatgcatcacgaattttttcag--acacaactggcaagttttaattgcatgatttatttgtttactt 243  Q
    |||||||| |||||||| | ||||||||||||| | |||||||||||  ||||| || ||||||||||||||||||||||||||||| ||||    
T  22650391 ggaaaatgttatttccagcgaaggaaatgcatctccaattttttcagacacacagctcgcaagttttaattgcatgatttatttgttcactt 22650482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 521791 - 521865
Alignment:
Q  183 catcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||| ||||||||| |||||||  || |||||||||||||||||||||||||||| |||||||||||| |||||    
T  521791 catcaagaattttttaagacacagttgtcaagttttaattgcatgatttatttgttcacttcctatttttcagcc 521865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 251
Target Start/End: Complemental strand, 36517661 - 36517618
Alignment:
Q  208 tggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||||||||||||||||| ||||||||||||    
T  36517661 tggcaagttttaattgcatgatttatttgttcacttcctatttt 36517618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 20912340 - 20912271
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  ||||| | |||  ||||||||||||||||||||||||||| ||||||||||||    
T  20912340 gcatcaagaatttttaaagacatagctgataagttttaattgcatgatttatttgttcacttcctatttt 20912271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 38176422 - 38176490
Alignment:
Q  189 gaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||||  |||||||  |||||||||||||||||||| |||||||||| ||||| |||||| |||||    
T  38176422 gaatttttcaagacacagttggcaagttttaattgcatgttttatttgttcacttcatatttttcagcc 38176490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 251
Target Start/End: Complemental strand, 31788471 - 31788409
Alignment:
Q  189 gaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||  |||||||| || |||||||||| |||| |||||||||||| ||||||||||||    
T  31788471 gaatttttcaagacacaattgacaagttttaactgcaagatttatttgttcacttcctatttt 31788409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Original strand, 34624535 - 34624577
Alignment:
Q  215 ttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  34624535 ttttaattgcatgatttatttgttcacttcctatttttcagcc 34624577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 23643005 - 23643074
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  ||||||| ||| ||| |||||||| ||| ||||||||||| ||||||||||||    
T  23643005 gcatcaagaatttttcaagacacagctgacaaattttaattccataatttatttgttcacttcctatttt 23643074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 45166399 - 45166324
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  |||| ||  |||||| |||||||||||||||||||||||  ||| |||||||| |||||    
T  45166399 gcatcaagaatttttcaagacgcagttggcaaattttaattgcatgatttatttgtccactccctatttttcagcc 45166324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 52546916 - 52546846
Alignment:
Q  181 tgcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||| |||||||   ||||||| ||  |||||||||||||||| ||||||||||| | ||||||||||    
T  52546916 tgcatcaagaattttccaagacacaccttacaagttttaattgcataatttatttgttcatttcctatttt 52546846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 50612900 - 50612961
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttactt 243  Q
    |||||| ||||||||  | ||||| ||| |||||||||||||||| ||||||||||| ||||    
T  50612900 gcatcaagaatttttcaatacacagctgacaagttttaattgcataatttatttgttcactt 50612961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 92 - 132
Target Start/End: Original strand, 22356143 - 22356183
Alignment:
Q  92 tcctgaattttaggatataagtcgaaattttgataagaatg 132  Q
    |||||||||||||||| ||||||| ||||||||||| ||||    
T  22356143 tcctgaattttaggatttaagtcggaattttgataacaatg 22356183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 251
Target Start/End: Original strand, 51297084 - 51297120
Alignment:
Q  215 ttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||||||||||||||||||||| |||| |||||||    
T  51297084 ttttaattgcatgatttatttgttcactttctatttt 51297120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 5e-23; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 13686166 - 13686091
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  13686166 gcatcaagaattttttaagacacaattggcaagttttaattgcatgatttatttgttcacttcctatttttcagcc 13686091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 182 - 256
Target Start/End: Complemental strand, 19899092 - 19899018
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagc 256  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  19899092 gcatcacgaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctaattttcagc 19899018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 28716343 - 28716418
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  |||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  28716343 gcatcaagaatttttcaagacacaactggcaagttttaattgcattatttatttgttcacttcctatttttcagcc 28716418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 14941013 - 14941082
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  |||||||||||||||||||||||| ||||||||||||||| ||||| ||||||    
T  14941013 gcatcaagaatttttcaagacacaactggcaagttttaatttcatgatttatttgttcacttcttatttt 14941082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 3810295 - 3810364
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||| ||||  ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||    
T  3810295 gcatcaagaaattttcaagacacagctggcaagttttaattgcatgatttatttgttcacttcttatttt 3810364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 156 - 235
Target Start/End: Original strand, 3377004 - 3377084
Alignment:
Q  156 aaaatgctatttccaacaaaggaaatgcatcacgaattttttcagacaca-actggcaagttttaattgcatgatttattt 235  Q
    |||||||||||| |||| || |||||||||||| ||| |||||||| ||| | | ||||||||||||||||||||||||||    
T  3377004 aaaatgctattttcaactaatgaaatgcatcacaaatcttttcagagacacagttgcaagttttaattgcatgatttattt 3377084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 251
Target Start/End: Original strand, 29689226 - 29689315
Alignment:
Q  156 aaaatgctatttccaacaaaggaaatgcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||| ||  |||||||||| ||||||||||||||| | |     |||||||||||||||||||||| ||| ||||||||||||    
T  29689226 aaaatgctatttccaacgaaaaaaatgcatcaagaattttttcagaca-atc-----agttttaattgcatgatttattagttcacttcctatttt 29689315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 45093175 - 45093244
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||| ||| |||  ||| || |||||||||||||||||| ||||||||||||||||||    
T  45093175 gcatcaagaattttttaagatacagttgggaaattttaattgcatgatttaattgtttacttcctatttt 45093244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 41464926 - 41464994
Alignment:
Q  183 catcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||| ||||||||  |||||||  || |||||||||||||||||||||||||||| |||| |||||||    
T  41464926 catcaagaatttttcaagacacagttgacaagttttaattgcatgatttatttgttcactttctatttt 41464994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 28429430 - 28429385
Alignment:
Q  206 actggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||    
T  28429430 actgacaagttttaattgcatgatttatttgttcacttcttatttt 28429385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 189 - 257
Target Start/End: Complemental strand, 25415079 - 25415011
Alignment:
Q  189 gaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||||  ||||||| |||  ||||||||||||||||||||||||||| |||| || |||| |||||    
T  25415079 gaatttttcaagacacagctgataagttttaattgcatgatttatttgttcactttctttttttcagcc 25415011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 42263997 - 42263929
Alignment:
Q  190 aattttttca-gacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||| ||||| || | |||||||||||||||| ||||||||||| | |||||||||| |||||    
T  42263997 aattttttcaagacacgacagtcaagttttaattgcataatttatttgttcatttcctatttttcagcc 42263929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 189 - 251
Target Start/End: Original strand, 40126533 - 40126595
Alignment:
Q  189 gaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||| ||| ||| ||  ||| ||||||||| |||||||||||||| ||||||||||||    
T  40126533 gaattttttaagatacagctcacaaattttaattgtatgatttatttgttcacttcctatttt 40126595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 35323508 - 35323557
Alignment:
Q  189 gaattttttcagacacaactggcaagttttaattgcatgatttatttgtt 238  Q
    |||||||||||||||||  || |||||||||||| |||||||||| ||||    
T  35323508 gaattttttcagacacagttgacaagttttaattacatgatttatatgtt 35323557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 223
Target Start/End: Original strand, 35676297 - 35676338
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattg 223  Q
    |||||| || |||||| |||||||||||||||||||||||||    
T  35676297 gcatcaagattttttttagacacaactggcaagttttaattg 35676338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 8e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 18375417 - 18375486
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18375417 gcatcaagaatttttcaagacacaactggcaagttttaattgcatgatttatttgttcacttcctatttt 18375486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 41878689 - 41878614
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  41878689 gcatcaagaatttttcaagacataactgacaagttttaattgcatgatttatttgtttacttcctatttttcagcc 41878614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 54358285 - 54358210
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||||| |  ||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  54358285 gcatcaagaatttttcaagacatagttggcaagttttaattgcatgatttatttgttcacttcctatttttcagcc 54358210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 17847568 - 17847637
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  |||||||  ||||||||||||||||||||||||||||||| |||| |||||||    
T  17847568 gcatcaagaatttttcaagacacagttggcaagttttaattgcatgatttatttgttcactttctatttt 17847637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 208 - 251
Target Start/End: Original strand, 4512215 - 4512258
Alignment:
Q  208 tggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||||| ||||||||||||||||||||||||    
T  4512215 tggcaagttttaattgcatcatttatttgtttacttcctatttt 4512258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 26179228 - 26179311
Alignment:
Q  174 aaggaaatgcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||||| |||| ||||||||| | ||||| ||| ||||||| ||||  |||||||||||||| |||||||||||| |||||    
T  26179228 aaggaaatgtatcaagaattttttaaaacacagctgtcaagtttcaatttgatgatttatttgttcacttcctatttttcagcc 26179311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 24683219 - 24683180
Alignment:
Q  212 aagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  24683219 aagttttaattgcatgatttatttgttcacttcctatttt 24683180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 47281588 - 47281627
Alignment:
Q  212 aagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  47281588 aagttttaattgcatgatttatttgttcacttcctatttt 47281627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 246
Target Start/End: Original strand, 23348147 - 23348203
Alignment:
Q  190 aattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcct 246  Q
    |||||||  ||| ||||| | |||||||||||||||||||||||||||| |||||||    
T  23348147 aatttttcaagaaacaaccgacaagttttaattgcatgatttatttgttcacttcct 23348203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 37674026 - 37674101
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||||||   || |||||||||||||||||||||||||||| ||||  |||||| |||||    
T  37674026 gcatcaagaatttttcaagacacgtgtgacaagttttaattgcatgatttatttgttaactttttatttttcagcc 37674101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 4391871 - 4391946
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||||||| |||||||||||||||||||| ||||||||||| |||||||||||| |||||    
T  4391871 gcatcaagaatttttcaagacacagctggcaagttttaattgcataatttatttgttcacttcctatttttcagcc 4391946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 40926008 - 40925933
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||||||| ||| ||||||||||||| |||||||||||||| |||||||||||| |||||    
T  40926008 gcatcaagaatttttcaagacacatctgacaagttttaattgtatgatttatttgttcacttcctatttttcagcc 40925933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 38614236 - 38614281
Alignment:
Q  212 aagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||||||||||||||||||||||||||||||||| |||||    
T  38614236 aagttttaattgcatgatttatttgtttacttcctatttttcagcc 38614281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 34286759 - 34286691
Alignment:
Q  190 aattttttca-gacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||| |||||||||| ||| |||||||||||||||||||||||| | |||||||||| |||||    
T  34286759 aattttttcaagacacaactgacaaattttaattgcatgatttatttgttcatttcctatttttcagcc 34286691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 3456907 - 3456856
Alignment:
Q  200 gacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||||| | |||||||||||||||||||||||||||| ||||||||||||    
T  3456907 gacacaaccgacaagttttaattgcatgatttatttgttcacttcctatttt 3456856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 37093937 - 37094006
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  |||||||  || |||||||||||||||| ||||||||||| ||||||||||||    
T  37093937 gcatcaagaatttttcaagacacagttgacaagttttaattgcataatttatttgttcacttcctatttt 37094006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 211 - 251
Target Start/End: Original strand, 6614301 - 6614341
Alignment:
Q  211 caagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  6614301 caagttttaattgcatgatttatttgttcacttcctatttt 6614341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 157 - 235
Target Start/End: Complemental strand, 28434399 - 28434321
Alignment:
Q  157 aaatgctatttccaacaaaggaaatgcatcacgaattttttcagacacaactggcaagttttaattgcatgatttattt 235  Q
    |||||| ||||||| | ||| |||||||||| ||||||||| ||| |||  | || |||||||||||||||||||||||    
T  28434399 aaatgcaatttccagcgaagcaaatgcatcaagaatttttttagatacagttagcgagttttaattgcatgatttattt 28434321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 251
Target Start/End: Complemental strand, 31644780 - 31644730
Alignment:
Q  201 acacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||| |||||||||||||||| |||||||||| ||||||||||||    
T  31644780 acacaattggtaagttttaattgcatggtttatttgttcacttcctatttt 31644730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 5481525 - 5481450
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||| |||||||  ||| || |||||| ||||||||||||||||| ||||  |||||| |||||    
T  5481525 gcatcaagaattttttaagacacagttggtaaattttaactgcatgatttatttgttcactttttatttttcagcc 5481450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 243
Target Start/End: Complemental strand, 228189 - 228135
Alignment:
Q  190 aattttttca-gacacaactggcaagttttaattgcatgatttatttgtttactt 243  Q
    |||||||||| |||||||||  ||||||||||||||||||| |||||||| ||||    
T  228189 aattttttcaagacacaacttacaagttttaattgcatgatatatttgttcactt 228135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 190 - 248
Target Start/End: Complemental strand, 32891339 - 32891281
Alignment:
Q  190 aattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctat 248  Q
    |||||||  |||||||  || ||| |||||||||||||||||||||||| |||||||||    
T  32891339 aatttttcaagacacagttgacaaattttaattgcatgatttatttgttcacttcctat 32891281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 249
Target Start/End: Original strand, 35672369 - 35672403
Alignment:
Q  215 ttttaattgcatgatttatttgtttacttcctatt 249  Q
    |||||||||||||||||||||||| ||||||||||    
T  35672369 ttttaattgcatgatttatttgttcacttcctatt 35672403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 8692681 - 8692612
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| |||| |||  ||||||| ||| ||| ||||||||||||||||||||| || |||| |||||||    
T  8692681 gcatcaagaatctttcaagacacagctgacaaattttaattgcatgatttatttattcactttctatttt 8692612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 11739275 - 11739320
Alignment:
Q  212 aagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||||||||||| ||||||||||| || ||||||||| |||||    
T  11739275 aagttttaattgcataatttatttgttcacctcctatttttcagcc 11739320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 29223612 - 29223567
Alignment:
Q  206 actggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||| |||||||||||||||||||||||||||  ||||| ||||||    
T  29223612 actgacaagttttaattgcatgatttatttgtacacttcttatttt 29223567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 251
Target Start/End: Complemental strand, 11643485 - 11643387
Alignment:
Q  154 ggaaaatgctatttccaacaaaggaaatgcatcacgaattttttcagacacaac-tggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||||| ||||||||   ||||||||| |||| ||||||||||||||||| | |||||| ||||||||| |||||||||||||| ||||| ||||||    
T  11643485 ggaaaatgttatttccagtgaaggaaatgtatcaagaattttttcagacacagcatggcaaattttaattgtatgatttatttgttcacttcgtatttt 11643387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 257
Target Start/End: Original strand, 36473076 - 36473150
Alignment:
Q  183 catcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||| ||||||||  |||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |||||    
T  36473076 catcaagaatttttcaagacacaattggtaagttttaattgcatgatttatttgttcacttcctatttttcagcc 36473150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 15561940 - 15562015
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||| |||  |||||||||||||||| |||||||||||||| |||||||||||| |||||    
T  15561940 gcatcaagaatttttcaagatacagttggcaagttttaattgtatgatttatttgttcacttcctatttttcagcc 15562015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 33889021 - 33888946
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||| ||||||| |||||||||||||||| ||||||||||| ||| |||||||| |||||    
T  33889021 gcatcaagaatttttcaagaaacaactgacaagttttaattgcataatttatttgttcactccctatttttcagcc 33888946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 4851877 - 4851831
Alignment:
Q  211 caagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||||||||||||||||||||||| |||||||||| |||||    
T  4851877 caagttttaattgcatgatttatttgtttatttcctatttttcagcc 4851831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 251
Target Start/End: Complemental strand, 1005739 - 1005693
Alignment:
Q  205 aactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||| |||||||||||||||| ||||||||||| ||||||||||||    
T  1005739 aactgacaagttttaattgcataatttatttgttcacttcctatttt 1005693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 39112804 - 39112746
Alignment:
Q  199 agacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||| |||||| ||||||||| |||||||||||||| |||| ||||||| |||||    
T  39112804 agacacaattggcaaattttaattggatgatttatttgttcactttctatttttcagcc 39112746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 41322674 - 41322633
Alignment:
Q  210 gcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||||||||| ||||| ||||||||||||    
T  41322674 gcaagttttaattgcatgatttaattgttaacttcctatttt 41322633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 243
Target Start/End: Original strand, 11653738 - 11653798
Alignment:
Q  183 catcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttactt 243  Q
    ||||| ||||||||| ||||||  ||| |||||||||||| ||||||||||||||| ||||    
T  11653738 catcaagaattttttaagacacggctgacaagttttaattacatgatttatttgttcactt 11653798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 257
Target Start/End: Complemental strand, 2001803 - 2001745
Alignment:
Q  199 agacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||| ||| |||||||||||| ||||||||||||||| |||  ||||||| |||||    
T  2001803 agacacagctgccaagttttaattacatgatttatttgttcactatctattttccagcc 2001745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 7646802 - 7646869
Alignment:
Q  184 atcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||| ||||||||  ||||||| |||||||||||||||||||||||||||||||| | ||||||||||    
T  7646802 atcaggaatttttcaagacacatctggcaagttttaattgcatgatttatttgttcatttcctatttt 7646869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 257
Target Start/End: Original strand, 29487536 - 29487616
Alignment:
Q  177 gaaatgcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||||||| |||||||| ||||||||  ||| |||| || ||||||||||||||||||| ||| |||||||| |||||    
T  29487536 gaaatgcatcaagaatttttccagacacagttggtaagtgttgattgcatgatttatttgttcactccctatttttcagcc 29487616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Complemental strand, 25935681 - 25935606
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||||||| |||||||||||||||| |||||||||||  || |||| ||||||| |||||    
T  25935681 gcatcaagaatttttcaagacacagctggcaagttttaattacatgatttattctttcactttctatttttcagcc 25935606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 28898438 - 28898482
Alignment:
Q  212 aagttttaattgcatgatttatttgtttacttcctattttgcagc 256  Q
    ||||||||||||||||||||||||||| ||| |||||||| ||||    
T  28898438 aagttttaattgcatgatttatttgttcactccctattttacagc 28898482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Complemental strand, 8307687 - 8307626
Alignment:
Q  190 aattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||||  ||||||||||||||| |||||| ||||||||||||||||| ||||||||||||    
T  8307687 aatttttcaagacacaactggcaaattttaactgcatgatttatttgttcacttcctatttt 8307626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 27425787 - 27425848
Alignment:
Q  190 aattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||||  |||||||  ||||||||||||||||||||||||||||||| ||||||||||||    
T  27425787 aatttttcaagacacagttggcaagttttaattgcatgatttatttgttcacttcctatttt 27425848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 17612005 - 17611946
Alignment:
Q  192 ttttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||| || ||||||||||||    
T  17612005 ttttttaagacacaactgacaagttttaattgtatgatttatttattcacttcctatttt 17611946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 23991978 - 23992051
Alignment:
Q  184 atcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||| ||||||||  ||||||||||| ||||||||||||||||||| | |||||| |||| ||||||| |||||    
T  23991978 atcaagaatttttcaagacacaactgacaagttttaattgcatgatatttttgttcactttctatttttcagcc 23992051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 42195549 - 42195481
Alignment:
Q  183 catcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||| ||||||||| ||| ||||||   ||||||||||||||||||||||||||| ||| | ||||||    
T  42195549 catcaagaattttttaagatacaactaaaaagttttaattgcatgatttatttgttcactccttatttt 42195481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 22327001 - 22326962
Alignment:
Q  212 aagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    ||||||||||||||||||||||||||| |||| |||||||    
T  22327001 aagttttaattgcatgatttatttgttcactttctatttt 22326962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 4624489 - 4624443
Alignment:
Q  211 caagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||||||||||||||||||||| |||||||||||| |||||    
T  4624489 caagttttaattgcatgatttatttgttcacttcctatttttcagcc 4624443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 34476070 - 34475997
Alignment:
Q  184 atcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||| ||||||||  ||||| | ||| |||||||||||||||||||| ||||||| |||||||||||| |||||    
T  34476070 atcaagaatttttcaagacaaagctgacaagttttaattgcatgattgatttgttcacttcctatttttcagcc 34475997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 47550964 - 47550895
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatttt 251  Q
    |||||| ||||||||  ||| ||| ||||||||||||||||||||||||||| |||| | ||||||||||    
T  47550964 gcatcaagaatttttcaagaaacagctggcaagttttaattgcatgatttatatgttcatttcctatttt 47550895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 9098595 - 9098662
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatt 249  Q
    |||||| ||||||||  | ||||| ||| |||||||||||||||||||||||||||| ||||| ||||    
T  9098595 gcatcaagaatttttcaaaacacagctgacaagttttaattgcatgatttatttgttcacttcgtatt 9098662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 257
Target Start/End: Original strand, 31032723 - 31032798
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| ||||||||  ||| |||  || |||||||||||||||||||||||||||| |||| ||||||| |||||    
T  31032723 gcatcaagaatttttcaagatacagttgacaagttttaattgcatgatttatttgttcactttctatttttcagcc 31032798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 24135893 - 24135851
Alignment:
Q  215 ttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  24135893 ttttaattgcatgatttatttgttcacttcctatttttcagcc 24135851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 257
Target Start/End: Complemental strand, 34808088 - 34808034
Alignment:
Q  203 acaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||| |||||||||||||||||||||||||| || ||||| |||||| |||||    
T  34808088 acaactagcaagttttaattgcatgatttatttattcacttcatatttttcagcc 34808034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 257
Target Start/End: Complemental strand, 45010353 - 45010297
Alignment:
Q  201 acacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||| ||| ||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  45010353 acacatctgacaaattttaattgcatgatttatttgttcacttcttatttttcagcc 45010297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 1270336 - 1270269
Alignment:
Q  190 aattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||  |||||||  || ||||||||||||||| ||||||||| || |||||||||||| |||||    
T  1270336 aatttttcaagacacagttgacaagttttaattgcacgatttatttattcacttcctatttttcagcc 1270269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 16255027 - 16254960
Alignment:
Q  182 gcatcacgaattttttcagacacaactggcaagttttaattgcatgatttatttgtttacttcctatt 249  Q
    |||||| ||||||||  | ||||||||| |||  |||||||| |||||||||||||| ||||||||||    
T  16255027 gcatcaagaatttttcaatacacaactgacaaaatttaattgtatgatttatttgttcacttcctatt 16254960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 29095577 - 29095623
Alignment:
Q  211 caagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    ||||||||||||||||||| | |||||| |||||||||||| |||||    
T  29095577 caagttttaattgcatgatatctttgttcacttcctatttttcagcc 29095623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 190 - 257
Target Start/End: Complemental strand, 492832 - 492764
Alignment:
Q  190 aattttttca-gacacaactggcaagttttaattgcatgatttatttgtttacttcctattttgcagcc 257  Q
    |||||||||| ||||| || | |||||||||||||||| ||||||||||| | |||||||||| |||||    
T  492832 aattttttcaagacacgacagtcaagttttaattgcataatttatttgttcatttcctatttttcagcc 492764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University