View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_11 (Length: 452)
Name: NF18237_low_11
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 6979838 - 6980125
Alignment:
| Q |
1 |
tgttcttccaaatactccaaaaaatggtagtcatatgttggtagaggtccgacgtgagttgttgtagtaataaaagatggcttctgatgccgaagtagta |
100 |
Q |
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| T |
6979838 |
tgttcttccaaatactccaaaaaatggtagtcatctgttggtagaggtccgacgtgagttgttgtagtaataaaagatggcttctgatgtcgaagtagta |
6979937 |
T |
|
| Q |
101 |
gtgtgaacaactttatgaatgtcgtcacataattcggtcattcatcaacttgtgtagcaaaagggcaataaaaaattacatgtgtcaagtcttcatgagt |
200 |
Q |
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| T |
6979938 |
gtgtgaacaactttatgaatgtcgtcccataatttggtcattcatcaacttgtgtagcaaaagggcaataaaaaattacatgtgtcaagtcttcatgagt |
6980037 |
T |
|
| Q |
201 |
agaatcacaactaacccaacttgtagaacatcgcacacccttatcttgaaggcaagctcttgttagtagacaaccacaacacatacac |
288 |
Q |
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| T |
6980038 |
agaatcacaactaacccaacttgtagaacaccgcacacccttatcttgaaggcaagctcttgttagtagacaaccacaacacatacac |
6980125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 286 - 445
Target Start/End: Original strand, 6980345 - 6980507
Alignment:
| Q |
286 |
cacattggataactaacatttagtgacaaaatacccctaaatcagtcnnnnnnncaggcatcagtcaaattcaataaatttcctattccgtatttagttt |
385 |
Q |
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| T |
6980345 |
cacattggataactaacatttagtgataaaatacctctaaatcagtctttttttccggcctcagtcaaattcaataagtttcgtattctctatttagttt |
6980444 |
T |
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| Q |
386 |
tgccaaaagtcata---tttattagtgctaatatctcaattccatttattactttatgatgat |
445 |
Q |
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| T |
6980445 |
tgtcaaaagtcatagtatttattagtgctaatatctcaattccatttattactttatgatgat |
6980507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 47 - 200
Target Start/End: Complemental strand, 9283082 - 9282927
Alignment:
| Q |
47 |
gtccgacgtgagttgttgtagtaataa-aagatggcttctgatgccgaagtagtagtgtgaacaactttatgaatgtcgtcacataattcggtcattca- |
144 |
Q |
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||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||| |||||||||||||||| | ||| |||| | | | || ||| |
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| T |
9283082 |
gtccgacgtgagttgttgtagtaataagaagattgcttctgatgttgaagtagtagtgcgaacaactttatgaatattgtcccatattccagacactcac |
9282983 |
T |
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| Q |
145 |
tcaacttgtgtagcaaaagggcaataaaaaattacatgtgtcaagtcttcatgagt |
200 |
Q |
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| T |
9282982 |
taaacttgtgtagaaaaagggcaataaaaaattgcatgccccaagtcttcatgagt |
9282927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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