View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_14 (Length: 334)
Name: NF18237_low_14
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 334
Target Start/End: Original strand, 6794398 - 6794717
Alignment:
| Q |
13 |
aatatcaaaggctagacaacttaaatacatgaatttacacatcagaagtgttgtgcattttgaattgttgatggttttgcaatgagttatagatcttcaa |
112 |
Q |
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| T |
6794398 |
aatatcaaaggctagacaacttaaatacatgaatttacacatcatg-gtgttgtgcattttgaattgttgatggttttgcaatgagttatagatcttcaa |
6794496 |
T |
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| Q |
113 |
ctggataatgtacattttgaattggactccgaaggaggtggtgaagagcatcaaattcaataatgcttaattcaatattttaaaacttggtgcaatttat |
212 |
Q |
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| T |
6794497 |
ctggatagagtacattttgaattggactccgaaggaggtggtgaagagcatcaaattcaataatgcttaattcaatattttaaaacttggtgcaatttat |
6794596 |
T |
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| Q |
213 |
tcacagtgaagacatagtcttaaaatagaagatgaaatccaaaacataaatcttaaaattaattactctattgaatagaagatatagttactttttgtct |
312 |
Q |
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| T |
6794597 |
tcacagtgaagacatagtcttaaaatagaagatgaaatccaaaacataaatcttaaaattaattactcta-tgaatagaagatatagttactttttgtct |
6794695 |
T |
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| Q |
313 |
tttctaaatagttttttcctga |
334 |
Q |
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| T |
6794696 |
tttctaaatagttttttcctga |
6794717 |
T |
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