View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_15 (Length: 309)
Name: NF18237_low_15
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_15 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: scaffold0086 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 291
Target Start/End: Complemental strand, 16890 - 16615
Alignment:
| Q |
15 |
gataaaacaagattaactacaattgtgtgattaactatattgcactatagctaatcatttgagaattacacatgtaaaatgatactaagaccagtcttaa |
114 |
Q |
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| T |
16890 |
gataaaataagattagctacaattctgcgattaactatattgcactatagctaatcatttgagaattacatatgtaaaatgatactaagaccagtcttaa |
16791 |
T |
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| Q |
115 |
tttaatataaaaaccaatcaattatgatccactcatggtgattattagaaaggcgaaagagattgagattttttagcgtactctcttgattggaaagcat |
214 |
Q |
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| T |
16790 |
tttaatataaaa-ccaatcaattatgatccactcatggtaattattagaaaggcgaaagagattgagattttttagcgtactctcttgattggaaagcgt |
16692 |
T |
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| Q |
215 |
agacaaaaggaggccgtttccatcggttggaagcatccttttggagattagatcaagctcaattgctatgagcttac |
291 |
Q |
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| T |
16691 |
agacaaaaggaggccattttcatcggtttgaagcatccttttggagattagatcaagctcaattgctatgagcttac |
16615 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 7734730 - 7734807
Alignment:
| Q |
62 |
tagctaatcatttgagaattacacatgtaaaatgatactaagaccagtcttaatttaatataaaaaccaatcaattat |
139 |
Q |
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| T |
7734730 |
tagctaatcgtttgagaattacacatctaatatagttctaagaccattattaatttaataccgaaatcaatcaattat |
7734807 |
T |
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