View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18237_low_17 (Length: 292)
Name: NF18237_low_17
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 9546338 - 9546619
Alignment:
| Q |
1 |
ttcttcgacttgttgttgttcatactgatcatcttgatgttgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9546338 |
ttcttcgacttgttgttgttcatactgatcatcttgatgctgttgatcatgacgttgtgtatgagttttccatatgttgttatcttcgcgagacaatgat |
9546437 |
T |
|
| Q |
101 |
atgag-aaaaaagctacttcttcttcagttgttatatccgatgaagaactcagtacagaaacagactcattctgtactgagtttttcaccggatc---at |
196 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| || |
|
|
| T |
9546438 |
atgagaaaaaaagctacttcttcttcagttgttatatccgatgaagaactcagtacagaaaaagactcgttctgtactgagtttttcaccggatcattat |
9546537 |
T |
|
| Q |
197 |
ctttcttgacccgtttggatcgtggaccagttggattctttgatgattcagtttcactttctctatcttcctgaagaattat |
278 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||||||||| |
|
|
| T |
9546538 |
ctttcttgacccgtttggatcgtggtccagttggattctttgacgactcagtttcacttcctctatcttcctgaagaattat |
9546619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University