View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18237_low_20 (Length: 236)

Name: NF18237_low_20
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18237_low_20
NF18237_low_20
[»] chr4 (3 HSPs)
chr4 (1-221)||(166825-167045)
chr4 (1-119)||(106800-106918)
chr4 (155-221)||(131945-132011)
[»] scaffold0013 (1 HSPs)
scaffold0013 (1-119)||(88559-88677)
[»] chr7 (1 HSPs)
chr7 (1-118)||(13055224-13055341)
[»] chr3 (1 HSPs)
chr3 (29-110)||(12134943-12135024)
[»] chr8 (10 HSPs)
chr8 (12-124)||(5656649-5656761)
chr8 (15-109)||(5718267-5718361)
chr8 (15-109)||(5686120-5686214)
chr8 (6-109)||(5638186-5638289)
chr8 (6-109)||(5651384-5651487)
chr8 (6-108)||(5602654-5602756)
chr8 (6-108)||(5602916-5603018)
chr8 (6-108)||(5632352-5632454)
chr8 (6-86)||(5602090-5602170)
chr8 (6-86)||(5638450-5638530)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 167045 - 166825
Alignment:
Q  1 caatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  167045 caatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgag 166946  T
Q  101 atttcctgcaataaataaataagaggcaaaggttttatgttgatgttgactgactataagagccatattatttcatatcaaagaacttagatgaacctgt 200  Q
    || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  166945 atatcctgcaataaataaataagaggcaaaggttttatgttgatgctgactgactataagagccatattatttcatatcaaagaacttagatgaacctgt 166846  T
Q  201 tggggccaattgccttcttcc 221  Q
    |||||||||||||||||||||    
T  166845 tggggccaattgccttcttcc 166825  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 106918 - 106800
Alignment:
Q  1 caatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtg 100  Q
    |||||||||| ||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  106918 caatggaacccgtctacgatactcggctagagcccacaaggggtaaatatctctatacattgggtaatgcaacatacaatttttcatgaatactcctgtg 106819  T
Q  101 atttcctgcaataaataaa 119  Q
    ||||||||| |||||||||    
T  106818 atttcctgccataaataaa 106800  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 221
Target Start/End: Complemental strand, 132011 - 131945
Alignment:
Q  155 tataagagccatattatttcatatcaaagaacttagatgaacctgttggggccaattgccttcttcc 221  Q
    ||||||||||||||| ||| ||||||||| | | || ||||||| ||||| ||||| ||||||||||    
T  132011 tataagagccatattgtttaatatcaaaggattgagttgaaccttttgggaccaatcgccttcttcc 131945  T

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Target: scaffold0013 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 88559 - 88677
Alignment:
Q  1 caatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtg 100  Q
    |||||||||| ||||||||||||| |  |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  88559 caatggaacccgtctacgatactcagccagagcccacaatggaaaaatatttctatacattgggtaatgcaacatacaatttttcatgaatactcctgtg 88658  T
Q  101 atttcctgcaataaataaa 119  Q
    | ||||||| |||||||||    
T  88659 agttcctgcgataaataaa 88677  T

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Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 13055341 - 13055224
Alignment:
Q  1 caatggaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtg 100  Q
    ||||||||| | |||||||||||| | || ||||||||||||||||||||||||||||||||  |||||||||||||||||||| | |||| ||||||||    
T  13055341 caatggaacatatctacgatactcagctaaagcccacaatgggaaaatatctctatacattgtataatgcaacatacaatttttgaagaatactcctgtg 13055242  T
Q  101 atttcctgcaataaataa 118  Q
    ||| ||| ||||||||||    
T  13055241 attccctacaataaataa 13055224  T

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Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 110
Target Start/End: Original strand, 12134943 - 12135024
Alignment:
Q  29 agagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgca 110  Q
    |||||||| | ||| ||||||| |||||||||||| |||||||||||||||||||||| || || |||||||||||||||||    
T  12134943 agagcccatagtggaaaaatatttctatacattggataatgcaacatacaatttttcacgattgatcctgtgatttcctgca 12135024  T

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Target: chr8 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 5656649 - 5656761
Alignment:
Q  12 gtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgcaa 111  Q
    |||||||||| || | ||||||||||| ||| || |||||||||||||| | |||||||| ||| || |||||||||||| |||| |||| ||||||| |    
T  5656649 gtctacgatattcagctagagcccacattggaaatatatctctatacatagcgtaatgcagcatgcagtttttcatgaatactcccgtgagttcctgcca 5656748  T
Q  112 taaataaataaga 124  Q
     | ||||||||||    
T  5656749 aacataaataaga 5656761  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 5718267 - 5718361
Alignment:
Q  15 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgc 109  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||||| |||||||| ||| || |||||||||||| || |||||| |||||||    
T  5718267 tacgatattcagctagagcccacattgggaatatatctctaaacattgcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 5718361  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 5686120 - 5686214
Alignment:
Q  15 tacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttcctgc 109  Q
    ||||||| || | ||||||||||| |||||| ||||||||| |||| | |||||||| ||| || |||||||||||| || |||||| |||||||    
T  5686120 tacgatattcagctagagcccacattgggaatatatctctaaacatggcgtaatgcagcatgcagtttttcatgaatactgctgtgagttcctgc 5686214  T

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Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 5638186 - 5638289
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 105  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5638186 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5638285  T
Q  106 ctgc 109  Q
    ||||    
T  5638286 ctgc 5638289  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 109
Target Start/End: Original strand, 5651384 - 5651487
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 105  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5651384 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5651483  T
Q  106 ctgc 109  Q
    ||||    
T  5651484 ctgc 5651487  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 5602756 - 5602654
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 105  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5602756 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5602657  T
Q  106 ctg 108  Q
    |||    
T  5602656 ctg 5602654  T

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Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 108
Target Start/End: Complemental strand, 5603018 - 5602916
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 105  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5603018 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5602919  T
Q  106 ctg 108  Q
    |||    
T  5602918 ctg 5602916  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 108
Target Start/End: Original strand, 5632352 - 5632454
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttcatgaatgctcctgtgatttc 105  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| |||||| | |||| ||||| | |||    
T  5632352 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttcaaggatgcccctgtcagttc 5632451  T
Q  106 ctg 108  Q
    |||    
T  5632452 ctg 5632454  T

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Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 5602170 - 5602090
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 86  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
T  5602170 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5602090  T

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Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 86
Target Start/End: Original strand, 5638450 - 5638530
Alignment:
Q  6 gaacctgtctacgatactcggttagagcccacaatgggaaaatatctctatacattgggtaatgcaacatacaatttttca 86  Q
    ||||| || ||||||| || | ||||||| ||| ||| ||| |||||||||||||||| ||||||||||| ||| ||||||    
T  5638450 gaacccgtttacgatattcagctagagccaacattggaaaattatctctatacattggataatgcaacatgcaagttttca 5638530  T

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