View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_21 (Length: 236)
Name: NF18237_low_21
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_21 |
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| [»] scaffold0006 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 112; Significance: 9e-57; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 91 - 218
Target Start/End: Complemental strand, 19174383 - 19174256
Alignment:
| Q |
91 |
taattaccaaacatgatgatatccacgatggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgag |
190 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
19174383 |
taattaccaaacatgatgatatccacgatggattaatgctgagagtggacctaaagagcctccatctttatccaatgcaaagtattgaccaattgatgag |
19174284 |
T |
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| Q |
191 |
agagcataaactctttctctcttaccat |
218 |
Q |
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|||||||||||||||||| | ||||||| |
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| T |
19174283 |
agagcataaactctttctttgttaccat |
19174256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 91 - 218
Target Start/End: Original strand, 13407359 - 13407486
Alignment:
| Q |
91 |
taattaccaaacatgatgatatccacgatggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgag |
190 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
13407359 |
taattaccaaacatgatgatatccacgatggattaatgctgagagtggacgtaaagagcctccatctttatccaatgcaaagtattgaccaattgatgag |
13407458 |
T |
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| Q |
191 |
agagcataaactctttctctcttaccat |
218 |
Q |
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| T |
13407459 |
agagcataaactctttctttgttaccat |
13407486 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 118 - 221
Target Start/End: Original strand, 13395777 - 13395880
Alignment:
| Q |
118 |
atggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
217 |
Q |
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||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13395777 |
atggattaatgttgaaagtggacctaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
13395876 |
T |
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| Q |
218 |
tttt |
221 |
Q |
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|||| |
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| T |
13395877 |
tttt |
13395880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 118 - 218
Target Start/End: Original strand, 13384823 - 13384923
Alignment:
| Q |
118 |
atggattaatgctgagagtggacccaaagaacctccatctttatccaatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
217 |
Q |
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||||||||||| |||||||||| ||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13384823 |
atggattaatgttgagagtggagccaaagagcctccatcactatcacatgcaaagtattgaccaattgatgagagagcataaactctttctctcttacca |
13384922 |
T |
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| Q |
218 |
t |
218 |
Q |
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| T |
13384923 |
t |
13384923 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 190
Target Start/End: Original strand, 70086 - 70117
Alignment:
| Q |
159 |
tatccaatgcaaagtattgaccaattgatgag |
190 |
Q |
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| T |
70086 |
tatccaatgcaaagtattgaccaattgatgag |
70117 |
T |
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