View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_23 (Length: 229)
Name: NF18237_low_23
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 19 - 212
Target Start/End: Original strand, 11750517 - 11750710
Alignment:
| Q |
19 |
atgggaatacataaaagcttttgtgcacaacactggtcaatcaatggttcattacagtacctttattcttcaatggatggaagctataatatttgtgagc |
118 |
Q |
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| T |
11750517 |
atgggaatacataaaagcttttgtgcacaacactggtcaatcaatggttcattacagtacctttattcttcaatggatggaagctataatatttgtgagc |
11750616 |
T |
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| Q |
119 |
aagcaatgccaaaacggatgttactatttgtaattttctgcataaattctattagattccacagttctcttacaataatacttgaatcaaattc |
212 |
Q |
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| T |
11750617 |
aagcaatgccaaaacggatgttactgtttgtaattttctgcataaattctattagattccacagttctcttacaataatacttgaatcaaattc |
11750710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 212
Target Start/End: Original strand, 11834041 - 11834236
Alignment:
| Q |
16 |
aatatgggaatacataaaagcttttgtgcacaacactggtcaatcaatggttcattacagtac----ctttattcttcaatggatggaagctataatatt |
111 |
Q |
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| T |
11834041 |
aatatgggaatatataaaagcttttgtgaacaacagtggtcaa----tggttcattacaagacctttctttatttttccatcgatggaacctataatatt |
11834136 |
T |
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| Q |
112 |
tgtgagcaagcaatgccaaaacggatgttactatttgtaattttctgcataaattctattagattccacagttctcttacaataatacttgaatcaaatt |
211 |
Q |
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| T |
11834137 |
tgtgatcgaacaatgcaaaaacagatgttactgttcaaatttttctgcataaattctatcagattccacag-tctcttactgcaatatttgaatcaaatt |
11834235 |
T |
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