View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_3 (Length: 548)
Name: NF18237_low_3
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 17 - 541
Target Start/End: Original strand, 32258925 - 32259461
Alignment:
| Q |
17 |
aaaaataccaaacgcgtgtctat--catagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccct |
114 |
Q |
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| T |
32258925 |
aaaaataccaaacgcgtgtctatatcatagcttagtattattgattcttaacctccacctttctatttttcttgtatatatataaaaccctttcatccct |
32259024 |
T |
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| Q |
115 |
gtctcctccannnnnnnncctttctgctactagggcttaattttttgttcccctgtgtttgtgtttt-------------gctgcaacacaaacacagga |
201 |
Q |
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| T |
32259025 |
gtctcctccattttttttcctttctgcta---gggcttaattttttgttcccctatgtttgtgtttgctgcaacacaaacgcagcaacacaaacacagga |
32259121 |
T |
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| Q |
202 |
gtgaaccacattagttattcacaatcgtcatttaatgtgtttggaaacacgatggtaaattaactatgttattcatatggtcgcattgcaaatccaagca |
301 |
Q |
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| T |
32259122 |
gtgaaccacattagttattcacaatcgtcatttaatgtgtttggaaacacgatggtaaattaactatgttattcatatggtcgcatcacaaatccaagca |
32259221 |
T |
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| Q |
302 |
aacatttaattaattggtttgatattgatctatcaatggaggagaccttacgaggcaacggaaatgtctcactttcatttaattcccagggggtgttgaa |
401 |
Q |
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| T |
32259222 |
cacatttaattaattggtttgatattgatctatcaatggaggagaccttacgaggcaacggaaatgtctcactttcatttaattcccagggggtgttgaa |
32259321 |
T |
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| Q |
402 |
aatttgtgtaaaaaatgatagaaatgttggctcttatggcattttttctggagataatccatttgatttcactcttccggcaacattgttccaaatcatc |
501 |
Q |
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| T |
32259322 |
aatttgtgtaaaaaatgatagaaatgttggctcttatggcattttttctggagataatccattcgatttcactcttccggcaacattgttccaaatcatc |
32259421 |
T |
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| Q |
502 |
gttattgtcgtcctctctcaaactctttactttcttctca |
541 |
Q |
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| T |
32259422 |
attattgtcgtcctctctcaaactctttactttcttctca |
32259461 |
T |
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