View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18237_low_6 (Length: 524)
Name: NF18237_low_6
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 12 - 507
Target Start/End: Complemental strand, 43061344 - 43060849
Alignment:
| Q |
12 |
atgaacaggtgcttatttaatttattttggccttaatattatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatat |
111 |
Q |
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| T |
43061344 |
atgaacaggtgcttatttcatttattttggccctaatattatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatat |
43061245 |
T |
|
| Q |
112 |
cagactatagcagccactactcagaaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaaca |
211 |
Q |
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| T |
43061244 |
cggactatagcagccactactcaggaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaaca |
43061145 |
T |
|
| Q |
212 |
ttagagctacatatctatgtgcaaaccctgtacgacagctactataggatgaaacatattgcca-agattatcattttgtttgcgatctcgttgctgc-- |
308 |
Q |
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| T |
43061144 |
ttagagctacatatctatgtgcaaaccctgtttttca----ctataggatgaaacacattgccatagattatcattttgtttgcgatctcgttgctgctg |
43061049 |
T |
|
| Q |
309 |
-caagaagcttcaagtttcacatgtcccaacaagtcatcagctagccgatcttcacacaaagccgttatcctcggtatgacatcacttccttaaagacaa |
407 |
Q |
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| T |
43061048 |
ccaagaagcttcaagtttcacatgtcccaacaagtcatcagctacccgatcttctcacaaagccgttatcctcggtacgacatcacttccttaaagacaa |
43060949 |
T |
|
| Q |
408 |
gattggagttattgatgatacccccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagt |
507 |
Q |
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| T |
43060948 |
gattggagttattgatgatacctccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatcagt |
43060849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 15 - 504
Target Start/End: Complemental strand, 4775980 - 4775494
Alignment:
| Q |
15 |
aacaggtgcttatttaatttattttggccttaatattatctcttggtcatgcaagaagcagccaacagttgcaaaatcatcaactgaagctgaatatcag |
114 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||| |
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| T |
4775980 |
aacaggtgcttatttaatttattttggccctaatattatctcttggtcatgcaagaagcaaccaacaattgcaaaatcgtcaactgaagctgaatatcgt |
4775881 |
T |
|
| Q |
115 |
actatagcagccactactcagaaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacgatattctcagacaacatta |
214 |
Q |
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| T |
4775880 |
actatagcagccactactcaagaattaatatgggttcaaaacttgttacaagaacttcaaattccattaactgcaccaacaatattctaagacaacattg |
4775781 |
T |
|
| Q |
215 |
gagctacatatctatgtgcaaaccctgtacgacagctactataggatgaaacatattgcca-agattatcattttgtttgcgatctcgttgctgccaaga |
313 |
Q |
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| T |
4775780 |
gagctacatatctatgtgcaaaccctgt----ctttcactctaggatgaagcatattgccatagattatcattttgttcgcgatctcgttgccgccaaga |
4775685 |
T |
|
| Q |
314 |
agcttcaagtttcacatgtcccaacaagtcatcagctagccgatcttcacacaaagccgttatcctcggtatgacatcacttccttaaagacaagattgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||| | || |||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
4775684 |
agcttcaagtttcacatgtcccaacaagtcatcaaccagtcgatcttctaacaaagccgttatcctcggtacggcatcacttccttaaagacaagattgg |
4775585 |
T |
|
| Q |
414 |
agttattgatgatacccccatcttgagcgggcgtgtaggagtattaacttaagcatttaccaaatcaaataacaatggttgtaatgatatc |
504 |
Q |
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| T |
4775584 |
agttattgatgatacctccttcttgagggggcgtgtaggagtattaacttaagcattgaccaaatcaaagaataatggttgtaataatatc |
4775494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 208 - 242
Target Start/End: Original strand, 45192874 - 45192908
Alignment:
| Q |
208 |
aacattagagctacatatctatgtgcaaaccctgt |
242 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
45192874 |
aacattggagctacatatctatgtgcaaaccctgt |
45192908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 447 - 507
Target Start/End: Complemental strand, 448677 - 448614
Alignment:
| Q |
447 |
tgtaggagtattaacttaa---gcatttaccaaatcaaataacaatggttgtaatgatatcagt |
507 |
Q |
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||||||||||||||||||| ||||| |||||||||||||| |||| |||||| |||||||| |
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| T |
448677 |
tgtaggagtattaacttaattagcattgaccaaatcaaataatgatgggtgtaataatatcagt |
448614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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