View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18237_low_9 (Length: 478)
Name: NF18237_low_9
Description: NF18237
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18237_low_9 |
 | |
|
| [»] scaffold0006 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 470
Target Start/End: Complemental strand, 13407147 - 13406693
Alignment:
| Q |
1 |
ataaatatttggagaaaaatcaagagctaaatcaaatttttaacaaagcaatggctcaatctggtccattagatatgaaaaggattcttacattatataa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
13407147 |
ataaatatttggagaaaaatcaagagctaaatcaaatttttaacaaagcaatggctcaatctggtccattagaaatgaaaaggattcttacactatataa |
13407048 |
T |
|
| Q |
101 |
aggatttgagggagtctcaacattggttgatgtgggtggtggagtagggaatgctttgaaacagattatatctaaatatccttcaataaaaggcattaat |
200 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
13407047 |
aggatttgaggaagtctcaacactggttgatgtaggtggtggagtagggaatgctttgaaacagattatatctgaatatccttcaataaaaggcattaat |
13406948 |
T |
|
| Q |
201 |
tttgatttaccccaagtggttcaagatgcaccgactcatcctggtaaaatatatacatacataaacataagtgggtgtatgcgtgtgtgtatattcttct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||| | || |||||| ||||||||||| |
|
|
| T |
13406947 |
tttgatttaccccaagtggttcaagatgcaccaactcatccaggtaatatatata----------cataagag------tgtgtgtgtatatattcttct |
13406864 |
T |
|
| Q |
301 |
ctttttatagtggctacg-nnnnnnnatgaattgaataattaggaatcctagaaagaatggaatatcattgtttagcaaaaattaataattagaaaatgc |
399 |
Q |
| |
|
||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| | |
|
|
| T |
13406863 |
ctttttatagttgctacgttttttttatgaattgaataattaggaatcctagaaagaatgggatatcattgtttagccaaaattaataattaggaaatcc |
13406764 |
T |
|
| Q |
400 |
acattaatctttgcttgcagggatagagcatgttgaaggaaatatgtttgaaagtgttccaagtgatgatg |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
13406763 |
acattaatctttgcttgcagggatagagcatgttgaaggaaatatgtttgaaagtgttccaggtggtgatg |
13406693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 75 - 259
Target Start/End: Original strand, 19174611 - 19174795
Alignment:
| Q |
75 |
atgaaaaggattcttacattatataaaggatttgagggagtctcaacattggttgatgtgggtggtggagtagggaatgctttgaaacagattatatcta |
174 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19174611 |
atgaaaaggattcttacgttatataaaggatttgagggagtctcaacactggttgatgtaggtggtggagtagggaatgctttgaaacagattatatctg |
19174710 |
T |
|
| Q |
175 |
aatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcctggtaaaatatatacata |
259 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| |
|
|
| T |
19174711 |
aatatccttcaataaaaggcattaattttgatttacctcaagtggttcaagatgcaccaactcatccaggtaatatatatacata |
19174795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 326 - 470
Target Start/End: Original strand, 19174827 - 19174971
Alignment:
| Q |
326 |
atgaattgaataattaggaatcctagaaagaatggaatatcattgtttagcaaaaattaataattagaaaatgcacattaatctttgcttgcagggatag |
425 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19174827 |
atgaattgaataattaggaatcctagaaagaatgggatatcattgtttagccaaaattaataattagaaaatgcacattaatctttgcttgcagggatag |
19174926 |
T |
|
| Q |
426 |
agcatgttgaaggaaatatgtttgaaagtgttccaagtgatgatg |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
19174927 |
agcatgttgaaggaaatatgtttgaaagtgttccaagtggtgatg |
19174971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 41 - 254
Target Start/End: Complemental strand, 13382780 - 13382567
Alignment:
| Q |
41 |
taacaaagcaatggctcaatctggtccattagatatgaaaaggattcttacattatataaaggatttgagggagtctcaacattggttgatgtgggtggt |
140 |
Q |
| |
|
|||||||||||||||||| ||||||||||| || || |||||||| ||| ||| |||||||||||||| ||||||||||| ||||||||||| || ||| |
|
|
| T |
13382780 |
taacaaagcaatggctcattctggtccattggaaattaaaaggatccttcaattttataaaggatttgaaggagtctcaacgttggttgatgttggaggt |
13382681 |
T |
|
| Q |
141 |
ggagtagggaatgctttgaaacagattatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatc |
240 |
Q |
| |
|
|||||||| || | | |||| ||||| ||| ||||||||||||| || || |||||||||||| | || ||||| |||||| ||||||| |||||| |
|
|
| T |
13382680 |
ggagtaggaaagaccctaaaactcattatctctcaatatccttcaattaagggaattaattttgatatgccacaagttgttcaaaatgcaccttctcatc |
13382581 |
T |
|
| Q |
241 |
ctggtaaaatatat |
254 |
Q |
| |
|
| |||||||||||| |
|
|
| T |
13382580 |
caggtaaaatatat |
13382567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 37 - 250
Target Start/End: Complemental strand, 13394153 - 13393940
Alignment:
| Q |
37 |
tttttaacaaagcaatggctcaatctggtccattagatatgaaaaggattcttacattatataaaggatttgagggagtctcaacattggttgatgtggg |
136 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||| || |||||||| || | |||||||||||| ||||| ||| ||||||||||||||||||| || |
|
|
| T |
13394153 |
tttttaacaaagcaatgggacaatctggaccattagaaattaaaaggatcctcaaattatataaaggttttgaaggaatctcaacattggttgatgttgg |
13394054 |
T |
|
| Q |
137 |
tggtggagtagggaatgctttgaaacagattatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgact |
236 |
Q |
| |
|
||||||||||| | | | |||| ||| | ||| ||||||||||||| || || |||||||||| ||||| |||| |||||||||||||| ||| |
|
|
| T |
13394053 |
aggtggagtaggagaaaccctaaaactcattctctctcaatatccttcaattaagggagttaattttgacttaccacaagctgttcaagatgcacctact |
13393954 |
T |
|
| Q |
237 |
catcctggtaaaat |
250 |
Q |
| |
|
| ||| |||||||| |
|
|
| T |
13393953 |
cttccaggtaaaat |
13393940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 11 - 83
Target Start/End: Complemental strand, 13625011 - 13624939
Alignment:
| Q |
11 |
ggagaaaaatcaagagctaaatcaaatttttaacaaagcaatggctcaatctggtccattagatatgaaaagg |
83 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||| || ||||||||| |
|
|
| T |
13625011 |
ggagaaaaatcaagagctaaatcaaatttttaacaaagcaatggcccattctgatccattggaaatgaaaagg |
13624939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 425 - 470
Target Start/End: Complemental strand, 13393821 - 13393776
Alignment:
| Q |
425 |
gagcatgttgaaggaaatatgtttgaaagtgttccaagtgatgatg |
470 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||||||| ||||| |
|
|
| T |
13393821 |
gagcatgttggaggagatatgtttgaaagtgttccaagtggtgatg |
13393776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 13525835 - 13525790
Alignment:
| Q |
148 |
ggaatgctttgaaacagattatatctaaatatccttcaataaaagg |
193 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
13525835 |
ggaatgctttgaaacaaattatatctgaatatccttcaattaaagg |
13525790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 20576337 - 20576292
Alignment:
| Q |
148 |
ggaatgctttgaaacagattatatctaaatatccttcaataaaagg |
193 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
20576337 |
ggaatgctttgaaacaaattatatctgaatatccttcaattaaagg |
20576292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 19079102 - 19079141
Alignment:
| Q |
148 |
ggaatgctttgaaacagattatatctaaatatccttcaat |
187 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19079102 |
ggaatgctttgaaacaaattatatctgaatatccttcaat |
19079141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 148 - 187
Target Start/End: Original strand, 19126990 - 19127029
Alignment:
| Q |
148 |
ggaatgctttgaaacagattatatctaaatatccttcaat |
187 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| |
|
|
| T |
19126990 |
ggaatgctttgaaacaaattatatctgaatatccttcaat |
19127029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 425 - 470
Target Start/End: Complemental strand, 13382391 - 13382346
Alignment:
| Q |
425 |
gagcatgttgaaggaaatatgtttgaaagtgttccaagtgatgatg |
470 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||| || ||||| |
|
|
| T |
13382391 |
gagcatgttggaggagatatgtttgaaagtgttccaactggtgatg |
13382346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 254
Target Start/End: Complemental strand, 13391043 - 13390955
Alignment:
| Q |
165 |
attatatctaaatatccttcaataaaaggcattaattttgatttaccccaagtggttcaagatgcaccgactcatcctggtaaaatatat |
254 |
Q |
| |
|
||||| ||| ||||||||||||| || || | |||||||| || || |||| |||||||||||||| |||||||| |||||||||||| |
|
|
| T |
13391043 |
attatctctcaatatccttcaatcaacggagtaaattttgactt-ccacaagctgttcaagatgcacctactcatccaggtaaaatatat |
13390955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0006 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0006
Description:
Target: scaffold0006; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 123192 - 123147
Alignment:
| Q |
148 |
ggaatgctttgaaacagattatatctaaatatccttcaataaaagg |
193 |
Q |
| |
|
|||||||||||||||| ||||||||| ||||||||||||| ||||| |
|
|
| T |
123192 |
ggaatgctttgaaacaaattatatctgaatatccttcaattaaagg |
123147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 217
Target Start/End: Complemental strand, 6283104 - 6283058
Alignment:
| Q |
171 |
tctaaatatccttcaataaaaggcattaattttgatttaccccaagt |
217 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
6283104 |
tctaagtatccttctataaagggcattaattttgatttgccccaagt |
6283058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University