View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18238_high_1 (Length: 1134)

Name: NF18238_high_1
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18238_high_1
NF18238_high_1
[»] chr6 (17 HSPs)
chr6 (788-1132)||(31565107-31565451)
chr6 (481-746)||(31565454-31565719)
chr6 (17-294)||(31565922-31566186)
chr6 (911-1134)||(33414293-33414516)
chr6 (291-454)||(31565718-31565883)
chr6 (921-1123)||(33383760-33383962)
chr6 (967-1120)||(33292802-33292955)
chr6 (921-1052)||(33351400-33351530)
chr6 (1001-1120)||(33269355-33269475)
chr6 (638-749)||(33413910-33414021)
chr6 (935-1038)||(33258067-33258170)
chr6 (739-895)||(33414090-33414254)
chr6 (667-749)||(33351038-33351120)
chr6 (769-907)||(33351212-33351363)
chr6 (1011-1051)||(31567428-31567468)
chr6 (1053-1122)||(33394918-33394988)
chr6 (564-614)||(33413817-33413867)
[»] chr2 (4 HSPs)
chr2 (911-1123)||(17445701-17445910)
chr2 (817-893)||(17445951-17446026)
chr2 (675-749)||(17446159-17446233)
chr2 (563-627)||(17446284-17446348)
[»] scaffold0428 (1 HSPs)
scaffold0428 (935-1038)||(2188-2291)
[»] chr5 (1 HSPs)
chr5 (80-199)||(11662784-11662909)


Alignment Details
Target: chr6 (Bit Score: 325; Significance: 0; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 788 - 1132
Target Start/End: Complemental strand, 31565451 - 31565107
Alignment:
Q  788 ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc 887  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565451 ttggcgtctaatcaacatttggttattatgatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttc 31565352  T
Q  888 ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcacca 987  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  31565351 ttgaaaactttttaagctataattgtttctccaagagtgaaccgaacaaaacgccgcacattaatgttctcgccaatggcagctatactttgcctcacca 31565252  T
Q  988 agtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctct 1087  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565251 agtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctct 31565152  T
Q  1088 tctgttcttgggttttgaagcaaggtcttctctctgaatttcaag 1132  Q
    |||||||| || |||||||||||||||||||||||| ||| ||||    
T  31565151 tctgttctcggcttttgaagcaaggtcttctctctgcattgcaag 31565107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 481 - 746
Target Start/End: Complemental strand, 31565719 - 31565454
Alignment:
Q  481 aagagcttacaaaaggagccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt 580  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565719 aagagcttacaaaaggtgccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt 31565620  T
Q  581 aagctttcactttttagatatatgcataacttataaagtaaatttcacaatatttgtatactgtaatcaaagagtgtctatccttgaatagatcaatgat 680  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  31565619 aagctttcactttttagatatatgcataacttatagagtaaatttcacaatatttgtatactgtaatcaaagagtggctatccttgaatagatcaatgat 31565520  T
Q  681 tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga 746  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565519 tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga 31565454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 31566186 - 31565922
Alignment:
Q  17 agttccaacacaaacaaaaattctaaataagcaagaacagttatttgacaaaaacccattaacaaaaacacaaattcgtgaaaacctatttcaggaatta 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||    
T  31566186 agttccaacacaaacaaaaattctaaataagcaagaacagttatttgacaaaaa-------------acacaaattcgtgaaaacctatttcaggaatta 31566100  T
Q  117 ccttaagtcaatcaaattcgatgtctttatcgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcaga 216  Q
     |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31566099 tcttaagtcgatcaaattcgatgtctttatcgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcaga 31566000  T
Q  217 aagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgataag 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31565999 aagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgataag 31565922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 3e-82
Query Start/End: Original strand, 911 - 1134
Target Start/End: Original strand, 33414293 - 33414516
Alignment:
Q  911 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 1010  Q
    ||||||||| ||||||||||||||||||||||||||  |||||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||    
T  33414293 tgtttctccgagagtgaaccgaacaaaacgccgcactttaatgttctctccaatagcagctatactttgcctcaccaagtctttcactacaacactgtca 33414392  T
Q  1011 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctcttctgttcttgggttttgaagcaa 1110  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||  |||||| ||||||||||||||    
T  33414393 tccttaataaaaggctgctctagaagagcaagctctcctaacctctttgagattcttccctcgacaattttctctctaatgttctcgggttttgaagcaa 33414492  T
Q  1111 ggtcttctctctgaatttcaagtt 1134  Q
    |||||||||| || || |||||||    
T  33414493 ggtcttctctttgcatctcaagtt 33414516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 147; E-Value: 6e-77
Query Start/End: Original strand, 291 - 454
Target Start/End: Complemental strand, 31565883 - 31565718
Alignment:
Q  291 taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  31565883 taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa 31565784  T
Q  391 acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatgaa 454  Q
    ||||||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||    
T  31565783 acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatgaa 31565718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 123; E-Value: 1e-62
Query Start/End: Original strand, 921 - 1123
Target Start/End: Original strand, 33383760 - 33383962
Alignment:
Q  921 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 1020  Q
    ||||||||||||||||||||||   |  |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  33383760 agagtgaaccgaacaaaacgcccagctttaatgttctcgccaatggcagctatactttgcctcaccaagtctttcactgaaacactgtcatccttaatga 33383859  T
Q  1021 aaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctcttctgttcttgggttttgaagcaaggtcttctct 1120  Q
    ||||||||| || |||||| || |||  ||| ||||||||||||||||||||||||||||| ||| || |||||| ||||||  ||||||||||||||||    
T  33383860 aaggctgctttataagagcgagatctggtaacctctttgagattcttccctcaacaattttctctgttatgttctcgggtttcaaagcaaggtcttctct 33383959  T
Q  1121 ctg 1123  Q
    |||    
T  33383960 ctg 33383962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 967 - 1120
Target Start/End: Original strand, 33292802 - 33292955
Alignment:
Q  967 cagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattct 1066  Q
    ||||||||||||||||| |||||||||| |   ||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||||||||||||||    
T  33292802 cagctatactttgcctctccaagtctttcaaagaaacactgtcatccttaatgaaaggctgctctataagagaaagccctcctaacctctttgagattct 33292901  T
Q  1067 tccctcaacaattttttctcttctgttcttgggttttgaagcaaggtcttctct 1120  Q
    ||||||||||||||| |||||| |||||| ||||||  ||||||||||||||||    
T  33292902 tccctcaacaattttctctcttatgttctcgggtttcaaagcaaggtcttctct 33292955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 80; E-Value: 6e-37
Query Start/End: Original strand, 921 - 1052
Target Start/End: Original strand, 33351400 - 33351530
Alignment:
Q  921 agagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatga 1020  Q
    |||||||||||||||||||||||| |  |||||||||| |||||  |||||||||||||||||||||||||||| |||| ||||||||| |||||||| |    
T  33351400 agagtgaaccgaacaaaacgccgcgctttaatgttctctccaataccagctatactttgcctcaccaagtctttcactacaacactgtcgtccttaat-a 33351498  T
Q  1021 aaggctgctctagaagagcaagctctcctaat 1052  Q
    |||| ||| |||||||||||||||||||||||    
T  33351499 aaggatgccctagaagagcaagctctcctaat 33351530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 73; E-Value: 9e-33
Query Start/End: Original strand, 1001 - 1120
Target Start/End: Original strand, 33269355 - 33269475
Alignment:
Q  1001 aacactgtcatccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctca-acaattttttctcttctgttcttggg 1099  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||||||||| |||||||| |||||||| |||||  |||||| |||    
T  33269355 aacactgtcatccttaataaaaggctactctagaagagcaagctctcctaacctctttgagatttttccctcagacaattttctctctaatgttctcggg 33269454  T
Q  1100 ttttgaagcaaggtcttctct 1120  Q
    |||  ||||||||||||||||    
T  33269455 tttcaaagcaaggtcttctct 33269475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 68; E-Value: 9e-30
Query Start/End: Original strand, 638 - 749
Target Start/End: Original strand, 33413910 - 33414021
Alignment:
Q  638 atactgtaatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaa 737  Q
    ||||| ||| ||||||||| ||||| |  || |||||||||||| |||||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  33413910 atactataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaa 33414009  T
Q  738 caattcagacct 749  Q
    ||||||| ||||    
T  33414010 caattcaaacct 33414021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 935 - 1038
Target Start/End: Original strand, 33258067 - 33258170
Alignment:
Q  935 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 1034  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  33258067 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 33258166  T
Q  1035 agag 1038  Q
    ||||    
T  33258167 agag 33258170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 58; E-Value: 8e-24
Query Start/End: Original strand, 739 - 895
Target Start/End: Original strand, 33414090 - 33414254
Alignment:
Q  739 aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttc 829  Q
    ||||||| |||||| ||||||| ||| ||||||| |||||||||| || |  ||| ||||||||||||||||||||||||         ||||||||| |    
T  33414090 aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatgaagaagcagatttctgttt-c 33414188  T
Q  830 aaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaaac 895  Q
    ||||||| ||||||||||  | ||||||||||||||||||||||||| | ||||| ||||||||||    
T  33414189 aaaattggtctcactctgccgcatacttcttcctatgaaaatgcaacgattacttctcttgaaaac 33414254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 667 - 749
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
Q  667 aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct 749  Q
    ||||||||||||||| |||||||||||| ||||||  || |||||||||||| ||||||||||||||||||||||||| ||||    
T  33351038 aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct 33351120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 769 - 907
Target Start/End: Original strand, 33351212 - 33351363
Alignment:
Q  769 tacatatcagtaaaatgtattggcgtctaatcaacatttggttattatga---------tttctgttttcaaaa-ttgatctcactctgttgtatacttc 858  Q
    |||| ||||||||||||| |  ||| ||||||||||||||||||||||||         ||||||||||||||| |||||||||||| |  | |||||||    
T  33351212 tacagatcagtaaaatgtgtccgcgcctaatcaacatttggttattatgaagaacaagatttctgttttcaaaaattgatctcactccgcagcatacttc 33351311  T
Q  859 ttcctatgaaaatgca---acaaatacttttcttgaaaactttttaagctat 907  Q
    ||||||||||||||||   |||||||||| |||||||| | || ||||||||    
T  33351312 ttcctatgaaaatgcaaagacaaatacttgtcttgaaagcgttgtaagctat 33351363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 1011 - 1051
Target Start/End: Complemental strand, 31567468 - 31567428
Alignment:
Q  1011 tccttaatgaaaggctgctctagaagagcaagctctcctaa 1051  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  31567468 tccttaatgaaaggctgctctagaagagaaagctctcctaa 31567428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1053 - 1122
Target Start/End: Original strand, 33394918 - 33394988
Alignment:
Q  1053 ctctttgagattcttccc-tcaacaattttttctcttctgttcttgggttttgaagcaaggtcttctctct 1122  Q
    |||||||||||||||||| ||||| ||||| |||||| |||||  ||||||  ||||||||||||||||||    
T  33394918 ctctttgagattcttcccctcaactattttctctcttatgttcccgggtttcaaagcaaggtcttctctct 33394988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 564 - 614
Target Start/End: Original strand, 33413817 - 33413867
Alignment:
Q  564 actttatcgcttcctttaagctttcactttttagatatatgcataacttat 614  Q
    ||||||||||| ||||||||||| ||||| ||||||||| |||||||||||    
T  33413817 actttatcgctccctttaagcttccacttcttagatatacgcataacttat 33413867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 107; Significance: 5e-53; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 107; E-Value: 5e-53
Query Start/End: Original strand, 911 - 1123
Target Start/End: Complemental strand, 17445910 - 17445701
Alignment:
Q  911 tgtttctccaagagtgaaccgaacaaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtca 1010  Q
    |||||||||  ||||||||| |||||||||||||||  |||    ||| ||||| ||||||||||||||||||||||| | ||| ||| |||| ||||||    
T  17445910 tgtttctccgggagtgaacctaacaaaacgccgcactttaaa---ctctccaatagcagctatactttgcctcaccaaatatttcactgaaacgctgtca 17445814  T
Q  1011 tccttaatgaaaggctgctctagaagagcaagctctcctaatctctttgagattcttccctcaacaattttttctcttctgttcttgggttttgaagcaa 1110  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||| | |||| |||||| |||| ||    
T  17445813 tccttaatgaaaggctgctctagaagagcaagctctcctaacctctttgagatccttccctcgacaattttctctcttatattctcgggtttcgaagaaa 17445714  T
Q  1111 ggtcttctctctg 1123  Q
    ||||||| |||||    
T  17445713 ggtcttccctctg 17445701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 8e-21
Query Start/End: Original strand, 817 - 893
Target Start/End: Complemental strand, 17446026 - 17445951
Alignment:
Q  817 gatttctgttttcaaaattgatctcactctgttgtatacttcttcctatgaaaatgcaacaaatacttttcttgaaa 893  Q
    ||||||||||| |||||||||||||||||||  | ||||||||||||||||||||||||||||||||| ||||||||    
T  17446026 gatttctgttt-caaaattgatctcactctgccgcatacttcttcctatgaaaatgcaacaaatacttgtcttgaaa 17445951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 675 - 749
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
Q  675 aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct 749  Q
    ||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| ||||    
T  17446233 aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct 17446159  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 563 - 627
Target Start/End: Complemental strand, 17446348 - 17446284
Alignment:
Q  563 aactttatcgcttcctttaagctttcactttttagatatatgcataacttataaagtaaatttca 627  Q
    |||||||| ||||||||||||||| |||||   ||||||| |||||||||||| || ||||||||    
T  17446348 aactttattgcttcctttaagcttccacttcccagatatacgcataacttatagagcaaatttca 17446284  T

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Target: scaffold0428 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 935 - 1038
Target Start/End: Original strand, 2188 - 2291
Alignment:
Q  935 aaaacgccgcacagtaatgttctcgccaatggcagctatactttgcctcaccaagtcttttactaaaacactgtcatccttaatgaaaggctgctctaga 1034  Q
    |||||||| |||  ||||| |||||| |||| ||||||||||| |||||||||||| ||| ||| ||||||||||||||||||||||||||| |||||||    
T  2188 aaaacgccacactttaatggtctcgcaaatgccagctatacttcgcctcaccaagtttttcactgaaacactgtcatccttaatgaaaggcttctctaga 2287  T
Q  1035 agag 1038  Q
    ||||    
T  2288 agag 2291  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 11662784 - 11662909
Alignment:
Q  80 aaaaacacaaattcgtgaaaacctatttcaggaattaccttaagtcaatcaaattcgatgtctttatc------gtcgaaaagagtggcagcaagtcttt 173  Q
    |||||||||||||  | |||||| |||||| |||||||||||| ||  |||||||| |||||||||||       ||||||||||| | |||| ||||||    
T  11662784 aaaaacacaaattaatcaaaaccgatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatgagtatcgaaaagagtaggagcaggtcttt 11662883  T
Q  174 gagaaagcgctggaggaggtgagaaa 199  Q
    |||||||| || ||||||||||||||    
T  11662884 gagaaagctctcgaggaggtgagaaa 11662909  T

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