View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18238_high_11 (Length: 469)

Name: NF18238_high_11
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18238_high_11
NF18238_high_11
[»] chr6 (3 HSPs)
chr6 (71-423)||(3942184-3942535)
chr6 (420-469)||(3944712-3944761)
chr6 (31-72)||(3942123-3942164)
[»] chr4 (2 HSPs)
chr4 (307-355)||(24007998-24008046)
chr4 (310-354)||(28265768-28265812)
[»] chr1 (1 HSPs)
chr1 (307-353)||(48575175-48575221)
[»] chr8 (2 HSPs)
chr8 (303-355)||(453480-453532)
chr8 (310-354)||(1091725-1091769)


Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 71 - 423
Target Start/End: Original strand, 3942184 - 3942535
Alignment:
Q  71 ttgataacacactctttttaaaaatgagttggtggacgtttgaaaatgtctactaccaactgctaatgtgcaccccgcctattttagaatatgtagttag 170  Q
    ||||||||||||||||||||||| |||||||||| ||||||| |||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||    
T  3942184 ttgataacacactctttttaaaactgagttggtgcacgtttgtaaatttctactaccaactgctaatgtgcaccccacctattttagaatttgtagttag 3942283  T
Q  171 aaggagtgcattaaccaattataaataaataatgactaaaaatactcaaatccacagctttgctataaaactcattctnnnnnnnnnnnnctagtggttc 270  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||             ||||||||||    
T  3942284 aaggagtgcattaaccaattataaataaataatggctaaaaatactcaaatccacagctttgctataaaactcattc-aaaaaaaaaaaactagtggttc 3942382  T
Q  271 tatattaacaatccctcaagactgacaatgaactggacttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagcttcgaatagtttaacc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3942383 tatattaacaatccctcaagactgacaatgaactggacttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagctacgaatagtttaacc 3942482  T
Q  371 gtttgattgatgaactagctatgtaagtttgtcaaaatgtggcgacgtggaaa 423  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  3942483 gtttgattgatgaactaactatgtaagtttgtcaaaatgtggcgacgtggaaa 3942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 420 - 469
Target Start/End: Original strand, 3944712 - 3944761
Alignment:
Q  420 gaaaaatacaatgacaatatctttttcttttggtgatatactatgacagt 469  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  3944712 gaaaaatacaatgacaatatctttttcttttggtgatataccatgacagt 3944761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 3942123 - 3942164
Alignment:
Q  31 gccttttcaaagtttgatttgtcaatttcattagactagttt 72  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  3942123 gccttttcaaagtttgatttgtcaatttcattggactagttt 3942164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 355
Target Start/End: Original strand, 24007998 - 24008046
Alignment:
Q  307 acttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagct 355  Q
    ||||||||||||||||| |||||| ||||||||  ||||||||||||||    
T  24007998 acttgagtttaaaattaagttcgttaaataaatgagttgaacttgagct 24008046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 28265768 - 28265812
Alignment:
Q  310 tgagtttaaaattacgttcgtcaaataaatatgttgaacttgagc 354  Q
    |||||||||||||| |||||||||| ||||  |||||||||||||    
T  28265768 tgagtttaaaattaagttcgtcaaacaaatgagttgaacttgagc 28265812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 307 - 353
Target Start/End: Original strand, 48575175 - 48575221
Alignment:
Q  307 acttgagtttaaaattacgttcgtcaaataaatatgttgaacttgag 353  Q
    |||||| |||||||||| |||||||||||||||  ||||||||||||    
T  48575175 acttgaatttaaaattaagttcgtcaaataaatgagttgaacttgag 48575221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 453532 - 453480
Alignment:
Q  303 ctggacttgagtttaaaattacgttcgtcaaataaatatgttgaacttgagct 355  Q
    ||||||||||||| ||||||| |||||| || |||||  ||||||||||||||    
T  453532 ctggacttgagttgaaaattaagttcgttaattaaatgagttgaacttgagct 453480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 310 - 354
Target Start/End: Complemental strand, 1091769 - 1091725
Alignment:
Q  310 tgagtttaaaattacgttcgtcaaataaatatgttgaacttgagc 354  Q
    |||||||||||||| |||||||||| ||||  |||||||||||||    
T  1091769 tgagtttaaaattaagttcgtcaaacaaatgagttgaacttgagc 1091725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University