View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_high_12 (Length: 469)
Name: NF18238_high_12
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_high_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 133 - 469
Target Start/End: Original strand, 29134122 - 29134458
Alignment:
| Q |
133 |
tggtccttatccttgcaaaaaagttccttcgtgtcagagtaacagcccataactatcttttgtcatacagttcatttatccaattgttttcctccaatcc |
232 |
Q |
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| T |
29134122 |
tggtccttatccttgcaaaaaagttccttcatgtcagagttgtagcccataactatcttttgtcatacagttcatttatccaattgttttcctccaatcc |
29134221 |
T |
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| Q |
233 |
aaacttcgtaaccatttcattccatgtttcttcaaattgactaacttcaatgtcattcaacatgcacttcttcaaatacgacattaaatcaggaatccca |
332 |
Q |
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| T |
29134222 |
aaacttcgtaaccatttcattccatgtttcttcaaattgactaacttcaatgtcatccaacatgcacttcttcaaatacgacattaaatcaggaatccca |
29134321 |
T |
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| Q |
333 |
acaatgctaattgcattgtgtagcaaatgccatgcacataacatatgacgggcattaggaaatactccatgtactgcattcttcacagctaaatctccat |
432 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| ||||||||||||| |
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| T |
29134322 |
acaatgctaattgcattgtgtagcaaatgccatgcacataacatatgacgggcattaggaaatactctatgtattgcattcttcacggctaaatctccat |
29134421 |
T |
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| Q |
433 |
ccgttataactgatattgatggcttcctttccattgc |
469 |
Q |
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| T |
29134422 |
ccgttataactgatattgatggcttcctttccattgc |
29134458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 18 - 134
Target Start/End: Original strand, 29133909 - 29134026
Alignment:
| Q |
18 |
tataatgcttt-ccggaaggacctcaaacttgtctgcatcacaaaatgatcatacttggattcaaaaccagtttccacttcacaaacaaaaataagtaaa |
116 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
29133909 |
tataatgcttttcccgaaggacctcaaacttgtctgcatcacaaaatgatcatacttggattcaaaatcagtttccacttcacaaacaaaaataagtaaa |
29134008 |
T |
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| Q |
117 |
gcacatttggaactgttg |
134 |
Q |
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| T |
29134009 |
gcacatttggaactgttg |
29134026 |
T |
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