View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_high_13 (Length: 456)
Name: NF18238_high_13
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 441
Target Start/End: Complemental strand, 27634015 - 27633571
Alignment:
| Q |
1 |
acccatatttcaagagaccaattacatatttaagccaatataaccctatgtttctaaaacctaagtgttatccatttctcatatttgagtcacctagaag |
100 |
Q |
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| T |
27634015 |
acccatatttcgagggaccaattacatatttaaaccaatataaccctatgtttctaaaacctaagtgttatccatttctcatatttgagtcacctagaag |
27633916 |
T |
|
| Q |
101 |
ggtacaaaaatcctaggtttcgagcagacatgtaaacttggacatatatgactcccatgacctagaaattgcattttctcaaacgcgcagacataagcaa |
200 |
Q |
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| T |
27633915 |
ggtacaaaaatcctaggtttcgagcagacatgtaaacttggacatatatgactcccatgacctagaaattgcattttctcaaacgcgcatacataagcaa |
27633816 |
T |
|
| Q |
201 |
cgaaagag---tgatagttgaaataaagaatggcagggcatacataagaagaaaagaggtcttgcaca-tttattatataatcgcgaatgagtgtcatta |
296 |
Q |
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| T |
27633815 |
cgaaagagtgatgatagttgaaataaagaatggcagggcatacataagaagaaaaaaggtcttgcacattttattatataatcgcgaatgagtgtcatta |
27633716 |
T |
|
| Q |
297 |
aatgtatgaacacgcatgcatttgaggctcaatatcatctaaaacatgatgacacgcaatgtcagatttacacttgccttaccatggcatgtttgtatgc |
396 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27633715 |
aatgtatgaacatgcatgcatttgaggctcaatatcatctaaaacatgatgacacgcaatgtcagatttacacttgccttaccatggcatgtttgtatgc |
27633616 |
T |
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| Q |
397 |
atgagcatatagttgacacttggatttttgtttcaacatcaagaa |
441 |
Q |
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| T |
27633615 |
atgagcatatagttgacacttggaagtttgttttaacatcaagaa |
27633571 |
T |
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