View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_high_2 (Length: 829)
Name: NF18238_high_2
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 481 - 746
Target Start/End: Complemental strand, 31565719 - 31565454
Alignment:
| Q |
481 |
aagagcttacaaaaggagccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt |
580 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31565719 |
aagagcttacaaaaggtgccatttatccacttgcttacaatcaagctctatgaacacggaagcaaaactcatgttaccgagcaactttatcgcttccttt |
31565620 |
T |
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| Q |
581 |
aagctttcactttttagatatatgcataacttataaagtaaatttcacaatatttgtatactgtaatcaaagagtgtctatccttgaatagatcaatgat |
680 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31565619 |
aagctttcactttttagatatatgcataacttatagagtaaatttcacaatatttgtatactgtaatcaaagagtggctatccttgaatagatcaatgat |
31565520 |
T |
|
| Q |
681 |
tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
746 |
Q |
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| T |
31565519 |
tgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcaga |
31565454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 31566186 - 31565922
Alignment:
| Q |
17 |
agttccaacacaaacaaaaattctaaataagcaagaacagttatttgacaaaaacccattaacaaaaacacaaattcgtgaaaacctatttcaggaatta |
116 |
Q |
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| T |
31566186 |
agttccaacacaaacaaaaattctaaataagcaagaacagttatttgacaaaaa-------------acacaaattcgtgaaaacctatttcaggaatta |
31566100 |
T |
|
| Q |
117 |
ccttaagtcaatcaaattcgatgtctttatcgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcaga |
216 |
Q |
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| T |
31566099 |
tcttaagtcgatcaaattcgatgtctttatcgtcgaaaagagtggcagcaagtctttgagaaagcgctggaggaggtgagaaagtaacagaaacctcaga |
31566000 |
T |
|
| Q |
217 |
aagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgataag |
294 |
Q |
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| T |
31565999 |
aagaaacagcttcagttgttgttggaatttatgatggttatgggttttgaggttgaagagcaaaagaaagttgataag |
31565922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 291 - 454
Target Start/End: Complemental strand, 31565883 - 31565718
Alignment:
| Q |
291 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatacccataaattgaa |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
31565883 |
taaggggttgaggaaaagtaagggcactttcgtcatttcattcccaaagatgaagaaaaggtgccaataattgtgttattttttatatccataaattgaa |
31565784 |
T |
|
| Q |
391 |
acattctaccatattcatta--acactcataattggcaccttctgtaagctctttatgaatatgaa |
454 |
Q |
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| T |
31565783 |
acattctaccatattcattaacacactcataattggcaccttttgtaagctctttatgaatatgaa |
31565718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 638 - 749
Target Start/End: Original strand, 33413910 - 33414021
Alignment:
| Q |
638 |
atactgtaatcaaagagtgtctatccttgaatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaa |
737 |
Q |
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||||| ||| ||||||||| ||||| | || |||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
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| T |
33413910 |
atactataagcaaagagtgcctatcttcaaacagatcaatgattaatgattattatcatttacatgataagtaacaaatgtcaagaattaatgaaacaaa |
33414009 |
T |
|
| Q |
738 |
caattcagacct |
749 |
Q |
| |
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||||||| |||| |
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| T |
33414010 |
caattcaaacct |
33414021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 667 - 749
Target Start/End: Original strand, 33351038 - 33351120
Alignment:
| Q |
667 |
aatagatcaatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
749 |
Q |
| |
|
||||||||||||||| |||||||||||| |||||| || |||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
33351038 |
aatagatcaatgattaatgattattatcctttacaatagtagtaacaaatgtcaagaattaatgaaacaaacaattcaaacct |
33351120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 739 - 818
Target Start/End: Original strand, 33414090 - 33414169
Alignment:
| Q |
739 |
aattcagacctcatctatcctcgatagagatacatatcagtaaaatgtattggcgtctaatcaacatttggttatgatga |
818 |
Q |
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||||||| |||||| ||||||| ||| ||||||| |||||||||| || | ||| ||||||||||||||||||| |||| |
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| T |
33414090 |
aattcagtcctcatgtatcctcaatacagatacagatcagtaaaacgtgtccgcgcctaatcaacatttggttattatga |
33414169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 564 - 614
Target Start/End: Original strand, 33413817 - 33413867
Alignment:
| Q |
564 |
actttatcgcttcctttaagctttcactttttagatatatgcataacttat |
614 |
Q |
| |
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||||||||||| ||||||||||| ||||| ||||||||| ||||||||||| |
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| T |
33413817 |
actttatcgctccctttaagcttccacttcttagatatacgcataacttat |
33413867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 9e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 675 - 749
Target Start/End: Complemental strand, 17446233 - 17446159
Alignment:
| Q |
675 |
aatgattgatgattattatcatttacatgagaagtaacaaatgttaagaattaatgaaacaaacaattcagacct |
749 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| | |||| ||||| |||||||||||||| |||| |
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| T |
17446233 |
aatgattaatgattattatcatttacatgagaagtaacaaatatcaagagttaatcaaacaaacaattcaaacct |
17446159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 563 - 627
Target Start/End: Complemental strand, 17446348 - 17446284
Alignment:
| Q |
563 |
aactttatcgcttcctttaagctttcactttttagatatatgcataacttataaagtaaatttca |
627 |
Q |
| |
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|||||||| ||||||||||||||| ||||| ||||||| |||||||||||| || |||||||| |
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| T |
17446348 |
aactttattgcttcctttaagcttccacttcccagatatacgcataacttatagagcaaatttca |
17446284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 80 - 199
Target Start/End: Original strand, 11662784 - 11662909
Alignment:
| Q |
80 |
aaaaacacaaattcgtgaaaacctatttcaggaattaccttaagtcaatcaaattcgatgtctttatc------gtcgaaaagagtggcagcaagtcttt |
173 |
Q |
| |
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||||||||||||| | |||||| |||||| |||||||||||| || |||||||| ||||||||||| ||||||||||| | |||| |||||| |
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| T |
11662784 |
aaaaacacaaattaatcaaaaccgatttcaagaattaccttaaatcgctcaaattcaatgtctttatcatgagtatcgaaaagagtaggagcaggtcttt |
11662883 |
T |
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| Q |
174 |
gagaaagcgctggaggaggtgagaaa |
199 |
Q |
| |
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|||||||| || |||||||||||||| |
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| T |
11662884 |
gagaaagctctcgaggaggtgagaaa |
11662909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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