View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18238_high_20 (Length: 311)
Name: NF18238_high_20
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_high_20 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 18099804 - 18100082
Alignment:
| Q |
15 |
aatggacaaaactcaaacagacatctctgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgta |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18099804 |
aatggacaaaactcaaacagacatctttgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgta |
18099903 |
T |
|
| Q |
115 |
gtagacacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaagggtaaagatggtgcctcactactacttgtgtga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
18099904 |
gtagacacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaacggtgaagatggtgcctcactactacttgtgtga |
18100003 |
T |
|
| Q |
215 |
tcaaattgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcgtgtggatgagcactgt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
18100004 |
tcaaattgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcatgtggatgagcactgt |
18100082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 15 - 293
Target Start/End: Original strand, 37857412 - 37857690
Alignment:
| Q |
15 |
aatggacaaaactcaaacagacatctctgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgta |
114 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37857412 |
aatggacaaaactcaaacagacatctttgtctctttgcatatacttgttctgttgtccaataataatagtttcacgtgactgacacaaacaacccatgta |
37857511 |
T |
|
| Q |
115 |
gtagacacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaagggtaaagatggtgcctcactactacttgtgtga |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
37857512 |
gtagacacttcagacagtttgggtcccaatcataataacaatcatactccaaaagaatttaatcaacggtgaagatggtgcctcactactacttgtgtga |
37857611 |
T |
|
| Q |
215 |
tcaaattgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcgtgtggatgagcactgt |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
37857612 |
tcaaattgcatggaatcaacggctaagggcatgttctcttggtctggactacactttatatcatgtggatgagcactgt |
37857690 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 21101023 - 21101067
Alignment:
| Q |
227 |
gaatcaacggctaagggcatgttctcttggtctggactacacttt |
271 |
Q |
| |
|
|||||||||||||| |||||||| ||||| || |||||||||||| |
|
|
| T |
21101023 |
gaatcaacggctaatggcatgttttcttgatcaggactacacttt |
21101067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University