View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_10 (Length: 493)
Name: NF18238_low_10
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 428; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 9 - 479
Target Start/End: Original strand, 41702164 - 41702632
Alignment:
| Q |
9 |
agcacagaggatttagtgcatatgtggtacatttttaaaatatgagcgaccgcatttgttttcctcttaaagaataacatgcaagtttttaaaatagaaa |
108 |
Q |
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| T |
41702164 |
agcacagaggatttagtgtatatgtggtacatttttaaaatatgagcgaccgtatttgttttcctcttaaagaacaacatggaggtttttaaaatagaaa |
41702263 |
T |
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| Q |
109 |
taatttaaacctctaagattctctaaaataacatggaattcgtacataaacgctggcgatgaatgaaactatcaagcacaaatttggtatccaactcaaa |
208 |
Q |
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| T |
41702264 |
taatttaaacctctaagattctctaaaataacacggaattcgtacataaacgctggcgatgaatgaaactatcaagaacaaatttggtatccaactcaaa |
41702363 |
T |
|
| Q |
209 |
aataacattcttgatatttagatccatcatccacaaacaagcttgatatagaccaacagcttccccttcatgaatagttaaccgaggtgagcaacaaaga |
308 |
Q |
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| T |
41702364 |
aataaca--cttgatatttagatccatcatccacaaacaagcttgatatagaccaacagcttccccttcatgaatagttaaccgaggtgagcaacaaaga |
41702461 |
T |
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| Q |
309 |
atttttgacagctatgaaagcgctctcattccttaaacacagtgtcaataatactttgatacattgagaatgaggcattggtgttgcattttcggaaacc |
408 |
Q |
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| T |
41702462 |
atgtttgacagctatgaaagcgctctcattccttaaacacagtgtcaataatactttgatacattgagaatgaggcattggtgttgcattttcggaaacc |
41702561 |
T |
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| Q |
409 |
aaaaggcgatttagaccattaatccccactagaagtcaatgtgttagaacttagaattacctgtataatct |
479 |
Q |
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| T |
41702562 |
aaaaggcgatttagaccattaatccccactagaagtcaatgtgttagaacttagaattacctgtataatct |
41702632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 32674314 - 32674390
Alignment:
| Q |
188 |
aaatttggtatccaactcaaaaataacattcttgatatttagatccatcatccacaaacaagcttgatatagaccaa |
264 |
Q |
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| T |
32674314 |
aaatttgacatccaactcaagcattacattattgacatttagctctatcattcacaatcaagcttgatattgaccaa |
32674390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 4664567 - 4664622
Alignment:
| Q |
174 |
aaactatcaagcacaaatttggtatccaactcaaaaataacattcttgatatttag |
229 |
Q |
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| T |
4664567 |
aaactatctagcacaaatttggcatccaactcaaacaagactttcttgatatttag |
4664622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 282
Target Start/End: Original strand, 8803567 - 8803640
Alignment:
| Q |
206 |
aaaaataacattcttgatatttagatccatcatccacaaacaagcttgatatagaccaacagcttccccttcatgaa |
282 |
Q |
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|||||||||||||| || ||||| | |||||||||||||||||||| |||| |||| | ||||||||||||||| |
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| T |
8803567 |
aaaaataacattctggacatttaccttcatcatccacaaacaagcttcatat---ccaaaaacttccccttcatgaa |
8803640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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