View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_15 (Length: 445)
Name: NF18238_low_15
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_15 |
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| [»] scaffold0571 (1 HSPs) |
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| [»] scaffold1089 (1 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: scaffold0571 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: scaffold0571
Description:
Target: scaffold0571; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 109 - 435
Target Start/End: Complemental strand, 539 - 212
Alignment:
| Q |
109 |
gatagaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaattgctttcagtaccaccgttctttcgaagcggtgga |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||| |
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| T |
539 |
gatagaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaatcgctttcactaccaccgttctttcgaaacggtgga |
440 |
T |
|
| Q |
209 |
tcccactttgccactcacttaccattctccgcttcgatgatgaaactgtgcacaactacgcagcctttaatagtttatgtcaatttattgatacattcat |
308 |
Q |
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||||||||||||||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||||||| |
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| T |
439 |
tcccactttgccactcactcactattctccgcttcgatgatgaaaccgtg---tactacgcagcctttaatagtgtatgtggatttattgatacattcat |
343 |
T |
|
| Q |
309 |
gctccctcctcgtctgtcgaaccaattcatcaaaactttta----gccttaagtgtcgttttgtattaagttatcacatcttggatgcatgggtagaagc |
404 |
Q |
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| T |
342 |
gctccctcctcgtctttcaaaccaattcatcaaaacttttagcatgccttaagtgtcgttttgtattaagtgatcacatcttggatgcatggatagaagc |
243 |
T |
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| Q |
405 |
cgccaaacgacgctgtatcgaggaatttcat |
435 |
Q |
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||| |||||| | |||||||||||||||||| |
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| T |
242 |
cgctaaacgaggttgtatcgaggaatttcat |
212 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1089 (Bit Score: 218; Significance: 1e-119; HSPs: 1)
Name: scaffold1089
Description:
Target: scaffold1089; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 53 - 438
Target Start/End: Complemental strand, 1763 - 1367
Alignment:
| Q |
53 |
caaagcctactttgcaacttccctctctctc--aacgatggaagacaagacgaagatggatagaatcagtgacttacctgatgaattgctatgtcacata |
150 |
Q |
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|||| |||||||||||||||| ||||||||| ||||||||||||| | ||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
1763 |
caaaccctactttgcaacttctctctctctctcaacgatggaagactcaaagaagatggatagaatcagtaacttacctgatgaattattatgtcacata |
1664 |
T |
|
| Q |
151 |
ctttcttttcttcccatcaaaattgctttcagtaccaccgttctttcgaagcggtggatcccactttgccactcacttaccattctccgcttcgatgatg |
250 |
Q |
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|| ||||||||||||| |||||| ||||||| |||||| ||||||||||||||||||| |||||||| ||||||||| |||||||||||||| ||||||| |
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| T |
1663 |
ctctcttttcttcccaccaaaatcgctttcactaccacagttctttcgaagcggtggaccccacttttccactcactcaccattctccgctttgatgatg |
1564 |
T |
|
| Q |
251 |
aaactgtgcacaactacgcagcctttaatagtttatgtcaatttattgatacattcatgctccctcctcgtctgtcgaaccaattcatcaaaacttttag |
350 |
Q |
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|||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
1563 |
aaaccgtgcacaactacgcagcctttaatagtgtatgtggatttattgatacattcatgctccctcctcgtctcccaaaccaattcatcaaaacttttag |
1464 |
T |
|
| Q |
351 |
ccttaagtgtcgttttgtattaagttat---------cacatcttggatgcatgggtagaagccgccaaacgacgctgtatcgaggaatttcatctc |
438 |
Q |
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||||||||||||||||||||| ||| || || |||||||| |||||||||||||| || |||| ||| ||||| ||||||||||||||| |
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| T |
1463 |
ccttaagtgtcgttttgtattcagtgattctaattgccatatcttggacgcatgggtagaagctgctaaacaacgttgtattgaggaatttcatctc |
1367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 137; Significance: 2e-71; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 75 - 438
Target Start/End: Complemental strand, 14439380 - 14439008
Alignment:
| Q |
75 |
ctctctctcaacgatggaagacaagacgaagatggatagaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaatt |
174 |
Q |
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|||||||||||||||| ||||| | |||||||| || ||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||| |
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| T |
14439380 |
ctctctctcaacgatgaaagactcaaggaagatggttacgatcagtgacttacctgatgaattattatgtcacatactctcttttcttcccaccaaaatc |
14439281 |
T |
|
| Q |
175 |
gctttcagtaccaccgttctttcgaagcggtggatcccactttgccactcacttaccattctccgcttcgatgatgaaactgtgcacaactacgcagcct |
274 |
Q |
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||||||| ||||| ||||||||||||||||||| |||||||| ||||||||| ||| |||| |||||||| || |||||||||| |||| | |||| |
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| T |
14439280 |
gctttcactaccagagttctttcgaagcggtggaccccacttttccactcactcaccgttcttcgcttcgactatcaaactgtgcatgactatgtcgcct |
14439181 |
T |
|
| Q |
275 |
ttaatagtttatgtcaatttattgatacattcatgctccctcctcgtctgtcgaaccaattcatcaaaacttttagccttaagtgtcgttttgtattaag |
374 |
Q |
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| ||| |||| ||| | ||||| |||||| |||||||| ||||||||||||| ||| |||||||||||| ||||||||||||||| ||||| | || || |
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| T |
14439180 |
tcaattgtttctgtgattttatagatacactcatgctctctcctcgtctgtcaaacaaattcatcaaaatatttagccttaagtgtagttttctgttcag |
14439081 |
T |
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| Q |
375 |
---------ttatcacatcttggatgcatgggtagaagccgccaaacgacgctgtatcgaggaatttcatctc |
438 |
Q |
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|| |||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
14439080 |
cgattctgattgccacatcttcgatacatgggtagaagccgccaaacgactgtgtatcgaggaatttcatctc |
14439008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 75 - 197
Target Start/End: Complemental strand, 14436243 - 14436121
Alignment:
| Q |
75 |
ctctctctcaacgatggaagacaagacgaagatggatagaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaatt |
174 |
Q |
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||||||||||||||||||| || | ||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| |
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| T |
14436243 |
ctctctctcaacgatggaaaactcaaagaagatggatagaatcagtgacttacccgatgaattattatgtcacatactctcttttcttcccatcaaaatc |
14436144 |
T |
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| Q |
175 |
gctttcagtaccaccgttctttc |
197 |
Q |
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||||||| ||||||| ||||||| |
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| T |
14436143 |
gctttcactaccacccttctttc |
14436121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 15398185 - 15398294
Alignment:
| Q |
106 |
atggatagaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaa-ttgctttcagtaccaccgttctttcgaagcgg |
204 |
Q |
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|||||||||||||| | ||||| ||||| || | ||||||||||| ||||||| ||||| ||||| ||||||| | ||| ||| ||||||| |||||| |
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| T |
15398185 |
atggatagaatcagcggattaccagatgagttattgtgtcacatactctcttttc-tcccaacaaaatttgcttttactacaacccttctttctaagcgg |
15398283 |
T |
|
| Q |
205 |
tggatcccact |
215 |
Q |
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|||| |||||| |
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| T |
15398284 |
tggaccccact |
15398294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 215
Target Start/End: Original strand, 15409972 - 15410081
Alignment:
| Q |
106 |
atggatagaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaa-ttgctttcagtaccaccgttctttcgaagcgg |
204 |
Q |
| |
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|||||||||||||| | ||||| ||||| || | ||||||||||| ||||||| ||||| ||||| ||||||| | ||| ||| ||||||| |||||| |
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| T |
15409972 |
atggatagaatcagcggattaccagatgagttattgtgtcacatactctcttttc-tcccaacaaaatttgcttttactacaacccttctttctaagcgg |
15410070 |
T |
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| Q |
205 |
tggatcccact |
215 |
Q |
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|||| |||||| |
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| T |
15410071 |
tggaccccact |
15410081 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 215
Target Start/End: Complemental strand, 43685584 - 43685481
Alignment:
| Q |
112 |
agaatcagtgacttacctgatgaattgctatgtcacatactttcttttcttcccatcaaaattgctttcagtaccaccgttctttcgaagcggtggatcc |
211 |
Q |
| |
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||||||||||||||||| |||||| | | ||||||||||| || |||||||| | || | | ||||||| ||||| |||||||| | |||||||| || |
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| T |
43685584 |
agaatcagtgacttaccagatgaaatattgtgtcacatactctcctttcttccgaccatactcgctttcaccaccactgttctttcaatgcggtggaccc |
43685485 |
T |
|
| Q |
212 |
cact |
215 |
Q |
| |
|
|||| |
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|
| T |
43685484 |
cact |
43685481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 154 - 215
Target Start/End: Original strand, 21479 - 21540
Alignment:
| Q |
154 |
tcttttcttcccatcaaaattgctttcagtaccaccgttctttcgaagcggtggatcccact |
215 |
Q |
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||||||||||| |||||| ||||||||| || ||||||||||| ||||| ||| ||||||| |
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| T |
21479 |
tcttttcttccgatcaaatatgctttcagaactaccgttctttccaagcgatggttcccact |
21540 |
T |
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