View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_16 (Length: 400)
Name: NF18238_low_16
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 238
Target Start/End: Complemental strand, 383696 - 383466
Alignment:
| Q |
8 |
aagcaaagggcatataaggtggaatattctggtataaatttagaatgacaaagatatgcttacatcaaaacaaagatatcagaaattatatattacannn |
107 |
Q |
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| T |
383696 |
aagcaaagggcatataaggtggaatattctggtataaatttagaatgacaaagatatgcttacatcaaaacaaagatatcagaaattatatattacattt |
383597 |
T |
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| Q |
108 |
nnnnactactgatagtaaaaatagtatattagatagaaggaaatgaatgtgagaaataaagaaattgaattagagaaaaacagttgcagagttccatata |
207 |
Q |
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| T |
383596 |
ttttactactgatagtaaaaatagtatattagaaagaaggaaatgaatttgagaaataaagaaattgaattagagaaaaacagttgcagagttccatata |
383497 |
T |
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| Q |
208 |
ctatagtgatagattaatgtggaaaacgcag |
238 |
Q |
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| T |
383496 |
ctatagtgatagattaatgtggaaaatgcag |
383466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 383405 - 383330
Alignment:
| Q |
300 |
taccttgcaagggcaataaagtttggttttagaaagcttttcttcttctttgatgttaaggcgtaaccaaccacta |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
383405 |
taccttgcaagggcaataaagtttggttttagaaagcttttcttcttctttgatgttaaggcgtaaccaaccacta |
383330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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