View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18238_low_18 (Length: 357)

Name: NF18238_low_18
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18238_low_18
NF18238_low_18
[»] chr2 (36 HSPs)
chr2 (12-357)||(43808392-43808737)
chr2 (159-248)||(33267572-33267661)
chr2 (173-256)||(11307229-11307312)
chr2 (173-248)||(18962108-18962183)
chr2 (173-248)||(9478224-9478299)
chr2 (173-248)||(17952771-17952846)
chr2 (173-243)||(28902007-28902077)
chr2 (179-276)||(15171147-15171244)
chr2 (176-248)||(3102618-3102690)
chr2 (160-248)||(14209202-14209290)
chr2 (63-128)||(43456649-43456714)
chr2 (173-257)||(29430672-29430755)
chr2 (217-257)||(44606202-44606242)
chr2 (169-219)||(3458610-3458661)
chr2 (173-279)||(28803576-28803682)
chr2 (69-128)||(29430821-29430880)
chr2 (83-125)||(1625967-1626009)
chr2 (176-257)||(3423841-3423922)
chr2 (188-245)||(5998787-5998844)
chr2 (175-248)||(37053519-37053592)
chr2 (207-245)||(42826314-42826352)
chr2 (173-206)||(1160814-1160847)
chr2 (94-131)||(18525210-18525247)
chr2 (160-205)||(19243577-19243622)
chr2 (168-248)||(34339048-34339128)
chr2 (173-234)||(40722547-40722606)
chr2 (215-248)||(44458450-44458483)
chr2 (71-128)||(44606060-44606117)
chr2 (88-128)||(1741999-1742039)
chr2 (175-246)||(3673734-3673805)
chr2 (173-217)||(5043630-5043674)
chr2 (194-241)||(5045248-5045295)
chr2 (218-246)||(13864577-13864605)
chr2 (173-205)||(31740029-31740061)
chr2 (173-205)||(37292417-37292449)
chr2 (218-258)||(43965245-43965285)
[»] chr5 (30 HSPs)
chr5 (173-258)||(35135732-35135817)
chr5 (173-248)||(32059659-32059733)
chr5 (159-243)||(32197657-32197741)
chr5 (176-273)||(20982208-20982305)
chr5 (218-276)||(26516195-26516253)
chr5 (159-248)||(11684348-11684435)
chr5 (180-248)||(29014681-29014749)
chr5 (173-248)||(36539671-36539746)
chr5 (175-246)||(37063146-37063217)
chr5 (175-242)||(41277422-41277490)
chr5 (207-258)||(4991048-4991098)
chr5 (63-114)||(7550460-7550511)
chr5 (88-123)||(8090004-8090039)
chr5 (74-128)||(11297149-11297203)
chr5 (71-121)||(12407680-12407730)
chr5 (182-248)||(29365544-29365609)
chr5 (80-130)||(37611174-37611224)
chr5 (80-130)||(37787904-37787954)
chr5 (176-248)||(6733966-6734037)
chr5 (179-247)||(7096203-7096271)
chr5 (207-276)||(33961600-33961668)
chr5 (57-130)||(40534260-40534333)
chr5 (70-130)||(4619768-4619828)
chr5 (218-278)||(6738522-6738582)
chr5 (173-205)||(8158371-8158403)
chr5 (190-242)||(8571302-8571353)
chr5 (88-128)||(10152397-10152437)
chr5 (98-130)||(11406255-11406287)
chr5 (83-127)||(12242672-12242716)
chr5 (88-128)||(14980572-14980612)
[»] chr1 (29 HSPs)
chr1 (175-248)||(45107548-45107620)
chr1 (173-237)||(48830146-48830210)
chr1 (69-124)||(4033965-4034020)
chr1 (175-256)||(30815707-30815789)
chr1 (175-240)||(1232964-1233029)
chr1 (172-256)||(870962-871046)
chr1 (73-126)||(16980868-16980921)
chr1 (184-240)||(1730825-1730881)
chr1 (182-253)||(48282053-48282125)
chr1 (81-128)||(49692012-49692059)
chr1 (194-248)||(3244829-3244883)
chr1 (173-258)||(4200144-4200229)
chr1 (71-129)||(4757400-4757458)
chr1 (83-125)||(6557039-6557081)
chr1 (183-248)||(33339500-33339565)
chr1 (71-128)||(38867783-38867838)
chr1 (207-273)||(46504322-46504387)
chr1 (173-254)||(52286597-52286678)
chr1 (173-260)||(4256112-4256200)
chr1 (91-128)||(6262801-6262838)
chr1 (75-112)||(7707269-7707306)
chr1 (173-248)||(28467377-28467454)
chr1 (88-129)||(28467495-28467536)
chr1 (71-128)||(34536221-34536278)
chr1 (210-242)||(7357455-7357487)
chr1 (173-205)||(9656618-9656650)
chr1 (173-240)||(15360827-15360894)
chr1 (173-276)||(17420100-17420203)
chr1 (163-258)||(23895251-23895346)
[»] scaffold0590 (1 HSPs)
scaffold0590 (174-248)||(1145-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (174-248)||(2756-2830)
[»] chr4 (32 HSPs)
chr4 (170-276)||(22684583-22684689)
chr4 (175-276)||(54414846-54414950)
chr4 (181-248)||(28581988-28582054)
chr4 (194-276)||(8422928-8423010)
chr4 (69-123)||(18628501-18628555)
chr4 (74-128)||(27123305-27123359)
chr4 (71-128)||(2996636-2996693)
chr4 (173-258)||(44319865-44319949)
chr4 (175-234)||(437504-437564)
chr4 (175-258)||(24193500-24193583)
chr4 (89-128)||(27725277-27725316)
chr4 (71-126)||(33534119-33534174)
chr4 (176-242)||(42321952-42322018)
chr4 (173-248)||(54325107-54325182)
chr4 (173-248)||(55437356-55437429)
chr4 (194-248)||(32920491-32920543)
chr4 (181-246)||(47970245-47970310)
chr4 (81-130)||(1554968-1555017)
chr4 (173-245)||(4071811-4071882)
chr4 (176-205)||(5219573-5219602)
chr4 (175-248)||(23819015-23819087)
chr4 (176-248)||(36734818-36734890)
chr4 (173-253)||(49219059-49219139)
chr4 (90-123)||(52428733-52428766)
chr4 (194-247)||(54986348-54986400)
chr4 (179-215)||(12162911-12162947)
chr4 (173-248)||(21157693-21157768)
chr4 (173-276)||(30024597-30024700)
chr4 (174-246)||(32724046-32724118)
chr4 (218-250)||(52645623-52645655)
chr4 (224-276)||(55599063-55599115)
chr4 (81-137)||(56007734-56007789)
[»] chr8 (24 HSPs)
chr8 (70-128)||(21130675-21130733)
chr8 (173-257)||(34788497-34788581)
chr8 (175-256)||(2699223-2699304)
chr8 (173-258)||(28769409-28769494)
chr8 (177-241)||(4558730-4558794)
chr8 (175-248)||(10722556-10722629)
chr8 (159-234)||(26215435-26215510)
chr8 (190-241)||(2595084-2595134)
chr8 (173-227)||(42237492-42237547)
chr8 (74-128)||(9700064-9700118)
chr8 (74-128)||(14949929-14949983)
chr8 (174-248)||(26717182-26717254)
chr8 (218-276)||(31875674-31875732)
chr8 (173-273)||(3645886-3645986)
chr8 (173-257)||(11056737-11056821)
chr8 (90-123)||(27412851-27412884)
chr8 (171-246)||(29262942-29263016)
chr8 (81-130)||(30191101-30191150)
chr8 (216-248)||(6918956-6918988)
chr8 (57-113)||(10923674-10923730)
chr8 (69-129)||(11376765-11376825)
chr8 (216-248)||(11952478-11952510)
chr8 (73-125)||(31915245-31915297)
chr8 (169-248)||(40357824-40357903)
[»] chr7 (26 HSPs)
chr7 (173-256)||(40428471-40428555)
chr7 (173-248)||(49060465-49060540)
chr7 (69-128)||(3500913-3500974)
chr7 (63-129)||(22387838-22387904)
chr7 (92-126)||(31149705-31149739)
chr7 (92-126)||(31167997-31168031)
chr7 (175-248)||(45593791-45593864)
chr7 (173-276)||(26935620-26935723)
chr7 (218-258)||(27389298-27389338)
chr7 (173-248)||(36370595-36370669)
chr7 (69-113)||(44151424-44151468)
chr7 (200-248)||(45078218-45078265)
chr7 (178-248)||(47004012-47004082)
chr7 (218-276)||(28844383-28844441)
chr7 (83-128)||(44808221-44808266)
chr7 (218-258)||(1431423-1431463)
chr7 (81-129)||(8094368-8094416)
chr7 (173-248)||(22759111-22759186)
chr7 (173-244)||(27481364-27481435)
chr7 (222-258)||(27517969-27518005)
chr7 (176-255)||(30496622-30496701)
chr7 (175-258)||(31341109-31341192)
chr7 (175-254)||(35536026-35536105)
chr7 (74-130)||(36537969-36538025)
chr7 (173-248)||(39551618-39551693)
chr7 (173-205)||(40689056-40689088)
[»] chr6 (28 HSPs)
chr6 (158-240)||(2034494-2034575)
chr6 (173-258)||(7351678-7351763)
chr6 (172-246)||(32513752-32513825)
chr6 (173-248)||(10452430-10452505)
chr6 (81-128)||(1669758-1669805)
chr6 (175-257)||(3217262-3217344)
chr6 (83-130)||(20368142-20368189)
chr6 (74-128)||(2460104-2460158)
chr6 (218-276)||(32975875-32975933)
chr6 (173-205)||(1402964-1402996)
chr6 (173-248)||(10032496-10032571)
chr6 (74-130)||(27693392-27693448)
chr6 (174-276)||(9833168-9833270)
chr6 (191-258)||(24332858-24332924)
chr6 (69-128)||(32577934-32577993)
chr6 (173-258)||(22742281-22742366)
chr6 (207-245)||(30817671-30817709)
chr6 (74-128)||(30863309-30863363)
chr6 (73-127)||(30865547-30865601)
chr6 (218-276)||(33068676-33068734)
chr6 (171-246)||(27693507-27693581)
chr6 (69-126)||(27857423-27857480)
chr6 (75-128)||(32917260-32917313)
chr6 (188-244)||(33911366-33911422)
chr6 (176-219)||(2027479-2027523)
chr6 (180-248)||(8010282-8010349)
chr6 (176-219)||(28660833-28660877)
chr6 (74-118)||(31668430-31668474)
[»] chr3 (30 HSPs)
chr3 (81-129)||(2175809-2175857)
chr3 (175-250)||(25459696-25459770)
chr3 (179-248)||(16790432-16790501)
chr3 (81-126)||(25182947-25182992)
chr3 (173-248)||(25183058-25183134)
chr3 (217-258)||(28842971-28843012)
chr3 (177-248)||(38462206-38462277)
chr3 (216-248)||(49772781-49772813)
chr3 (81-128)||(1810040-1810087)
chr3 (175-257)||(22232742-22232824)
chr3 (173-255)||(28779274-28779356)
chr3 (173-248)||(32703063-32703138)
chr3 (88-127)||(40880915-40880954)
chr3 (71-118)||(47584523-47584570)
chr3 (74-129)||(50015948-50016003)
chr3 (179-276)||(12985399-12985497)
chr3 (88-130)||(21574551-21574593)
chr3 (84-122)||(47132063-47132101)
chr3 (57-130)||(50004713-50004787)
chr3 (173-233)||(1395611-1395671)
chr3 (81-126)||(14548681-14548726)
chr3 (176-276)||(33965564-33965665)
chr3 (74-130)||(2304224-2304280)
chr3 (194-258)||(9279417-9279481)
chr3 (173-228)||(37689454-37689509)
chr3 (173-248)||(41028921-41028996)
chr3 (169-232)||(42809242-42809305)
chr3 (173-248)||(43116498-43116573)
chr3 (179-262)||(44284134-44284217)
chr3 (81-121)||(50211805-50211845)
[»] scaffold0153 (2 HSPs)
scaffold0153 (173-205)||(6568-6600)
scaffold0153 (173-205)||(13588-13620)
[»] scaffold0024 (1 HSPs)
scaffold0024 (159-234)||(21334-21409)


Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 36)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 12 - 357
Target Start/End: Complemental strand, 43808737 - 43808392
Alignment:
Q  12 agcaaaggagacttaaagtgaacttataatgagaacatgtttagattgactttattcactgacataaatacttgtaagactatttgagagagcttatgaa 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808737 agcaaaggagacttaaagtgaacttataatgagaacatgtttagattgactttattcactgacataaatacttgtaagactatttgagagagcttatgaa 43808638  T
Q  112 aataacttatgacatgttcgattgtccataagttattttcagcttattagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgt 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808637 aataacttatgacatgttcgattgtccataagttattttcagcttattagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgt 43808538  T
Q  212 tataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaaactattttatccaacaaataatctgttagattaga 311  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  43808537 tataaaaaatagcttatacataaacacttatatgatacgcgcttatgctataaacacttaattaaactattttatccaacaaataatctgttagattaga 43808438  T
Q  312 tcaacaaaatctatggccttcctaagcctagacacatataaaaatc 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  43808437 tcaacaaaatctatggccttcctaagcctagacacatataaaaatc 43808392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 33267572 - 33267661
Alignment:
Q  159 tagcttatagaaacagcttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||| |||||||||||||||||| ||||||||||||||||| |||||||||| | |||||| |||||||||| |||||||||||||    
T  33267572 tagcttataaaaacagcttatatgaaaacagtttaactttattttactgtttgttat-agaaatagattatacataagcacttatatgata 33267661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 11307312 - 11307229
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgtt-ataaaaaatagcttatacataaacacttatatgatacgcgctta 256  Q
    ||||| |||||||||||||| |||||| ||||| |||||| | |||||||||||||||||| ||||||| ||||||| |||||||    
T  11307312 agcttttatgaaaatagtttgactttactttatctttgttaaaaaaaaatagcttatacat-aacacttttatgataagcgctta 11307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 18962108 - 18962183
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| ||||||||||||||||||  |||||||| |||||||||| |||||||| |||||| ||||||    
T  18962108 agcttatatgaaaacagtttaactttattttatcttttgttat-aaaaatagctaatacataagcacttacatgata 18962183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 9478299 - 9478224
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||| ||| | |||||||||| |  ||||||| ||| ||||||||||||||||||||||||||||    
T  9478299 agcttatatgaaaatattttgagtttattttatctactgttatagaaa-tagcttatacataaacacttatatgata 9478224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 17952771 - 17952846
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | |||||||||||| |||| | |||||||||||    
T  17952771 agcttatatgaaaatagtttgactttattttatcttttgttat-agaaatagcttatatataagctcttatatgata 17952846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 243
Target Start/End: Complemental strand, 28902077 - 28902007
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttata 243  Q
    |||||||||||||| ||||||| |||||||||  || ||||||||||| |||||||||||||| ||||||||    
T  28902077 agcttatatgaaaacagtttaattttattttaacttatgttataaaaa-tagcttatacataagcacttata 28902007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 276
Target Start/End: Complemental strand, 15171244 - 15171147
Alignment:
Q  179 tatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    |||||||| | ||| |||||| ||||| || ||||||| |||| | ||||||||||||||||||||  ||||| ||||||| ||| |||||||||||||    
T  15171244 tatgaaaacattttgactttaatttatcttctgttatagaaaaaa-cttatacataaacacttataaaatacgagcttatgctataaacacttaattaa 15171147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 3102690 - 3102618
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||| |||||||||| |||||||||||| ||| | |||||||| |||||||||||||| || ||||||||||    
T  3102690 ttatataaaaatagtttgactttattttatattttgctataaaaa-tagcttatacataagcagttatatgata 3102618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 160 - 248
Target Start/End: Complemental strand, 14209290 - 14209202
Alignment:
Q  160 agcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||| |||| |||||||||||||| ||||| | ||||||||||  ||||||||   |||||||||| ||| ||||||||||||||||    
T  14209290 agcttatggaaatagcttatatgaaaacagtttgaatttattttatcttttgttat-tgaaatagcttagacagaaacacttatatgata 14209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 63 - 128
Target Start/End: Original strand, 43456649 - 43456714
Alignment:
Q  63 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||| ||| ||||||| |||||||||||| ||||| ||||||| |||||| |||| |||||||||    
T  43456649 ttatttactcacataaacacttgtaagactgtttgaaagagcttgtgaaaacaactcatgacatgt 43456714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 257
Target Start/End: Complemental strand, 29430755 - 29430672
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    |||||||| ||||| ||||| ||||||||| |  ||||||||| ||| |||||||||||||||| ||| |||||||  |||||||    
T  29430755 agcttataagaaaacagtttgactttatttaacttttgttatagaaa-tagcttatacataaacccttgtatgataaacgcttat 29430672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 257
Target Start/End: Original strand, 44606202 - 44606242
Alignment:
Q  217 aaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    |||||||||||||||||||||||||||| ||| ||||||||    
T  44606202 aaaatagcttatacataaacacttatataataagcgcttat 44606242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 3458661 - 3458610
Alignment:
Q  169 aaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaa 219  Q
    |||||||||||||||||| ||||| ||||||||||||  |||||||||||||    
T  3458661 aaacagcttatatgaaaaaagtttgactttattttatcttttgttataaaaa 3458610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 279
Target Start/End: Original strand, 28803576 - 28803682
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacactta 271  Q
    |||||||||||||  ||||| |||||||||||| ||| |||||  ||| || |||||| |||| ||||||||||||| ||  |||||  || ||||||||    
T  28803576 agcttatatgaaatcagtttgactttattttatcttttgttatcgaaa-taacttatatataagcacttatatgataagcatttatgccataaacactta 28803674  T
Q  272 attaaact 279  Q
    ||||||||    
T  28803675 attaaact 28803682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Complemental strand, 29430880 - 29430821
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||||| ||||||  |||||||||  ||| |||||||||||| ||||||||||||    
T  29430880 actgacataaacacttgtgggactatttggaagaacttatgaaaatagcttatgacatgt 29430821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 1626009 - 1625967
Alignment:
Q  83 ttgtaagactatttgagagagcttatgaaaataacttatgaca 125  Q
    |||||||||||||||||||| ||||||||| || |||||||||    
T  1626009 ttgtaagactatttgagagaacttatgaaagtagcttatgaca 1625967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 257
Target Start/End: Original strand, 3423841 - 3423922
Alignment:
Q  176 ttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    ||||||||||||| ||| ||||||||||||  |||| ||  ||||||| ||||||||||||||||| ||||||| || |||||    
T  3423841 ttatatgaaaataatttgactttattttatcttttggta-caaaaataacttatacataaacacttgtatgataagcacttat 3423922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 245
Target Start/End: Original strand, 5998787 - 5998844
Alignment:
Q  188 agtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatg 245  Q
    |||||||||||||||||| ||| ||||||||| |||||||||| ||||||| |||||||    
T  5998787 agtttaactttattttatcttttgttataaaa-atagcttatatataaacaattatatg 5998844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 37053592 - 37053519
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||| ||||| |||||||||||| || |||||| | ||||||  ||||||||| |||||||||||||    
T  37053592 cttatatgaaaacagtttgactttattttattttctgttat-agaaatagtctatacataagcacttatatgata 37053519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Complemental strand, 42826352 - 42826314
Alignment:
Q  207 tttgttataaaaaatagcttatacataaacacttatatg 245  Q
    ||||||||||||||||||||||| |||| ||||||||||    
T  42826352 tttgttataaaaaatagcttatatataagcacttatatg 42826314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 206
Target Start/End: Original strand, 1160814 - 1160847
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatg 206  Q
    |||||||||||||||||||| |||||||||||||    
T  1160814 agcttatatgaaaatagtttgactttattttatg 1160847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 18525210 - 18525247
Alignment:
Q  94 tttgagagagcttatgaaaataacttatgacatgttcg 131  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  18525210 tttgagagagcttatgaaaatagcttatgacatattcg 18525247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 205
Target Start/End: Complemental strand, 19243622 - 19243577
Alignment:
Q  160 agcttatagaaacagcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||||||||| |||| | ||||| ||||||||||    
T  19243622 agcttatagaaacagcttatatcaaaacaatttaaatttattttat 19243577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 248
Target Start/End: Complemental strand, 34339128 - 34339048
Alignment:
Q  168 gaaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||| ||||| ||| | |||||||||||| ||| | |||| |||| || |||||||||| |||||||||||||    
T  34339128 gaaacagcttatacgaaaacagtctgactttattttatctttagctatagaaaa-agtttatacataagcacttatatgata 34339048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 40722547 - 40722606
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataa 234  Q
    |||||||||||||| ||||  |||||||||||| |||||||||||||| ||||||| |||||    
T  40722547 agcttatatgaaaacagttcgactttattttat-tttgttataaaaaa-agcttatgcataa 40722606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 248
Target Start/End: Original strand, 44458450 - 44458483
Alignment:
Q  215 aaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||||||||||| ||||||||||||    
T  44458450 aaaaaatagcttatacataaatacttatatgata 44458483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 44606060 - 44606117
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||||| |||||||| |||| ||||  ||| |||||||||| ||||||||||||||    
T  44606060 tgacataagtacttgtacgactgtttggaagaacttatgaaaacaacttatgacatgt 44606117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 1741999 - 1742039
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||||||| ||||||||||| ||| ||||||||||||||    
T  1741999 agactatttgggagagcttatggaaacaacttatgacatgt 1742039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 3673805 - 3673734
Alignment:
Q  175 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatga 246  Q
    |||||||||||| | ||||||||||||||||  |||||||| | ||||| || |||||||| |||||||||||    
T  3673805 cttatatgaaaacaatttaactttattttatattttgttat-agaaataactaatacataagcacttatatga 3673734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 5043630 - 5043674
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaa 217  Q
    |||||||||||||| ||||| |||||||||||| ||| |||||||    
T  5043630 agcttatatgaaaacagtttgactttattttatctttcttataaa 5043674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 5045248 - 5045295
Alignment:
Q  194 actttattttatgttt-gttataaaaaatagcttatacataaacactta 241  Q
    |||||||||||| ||| ||||||||| ||||||||||||||||||||||    
T  5045248 actttattttatcttttgttataaaa-atagcttatacataaacactta 5045295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 246
Target Start/End: Complemental strand, 13864605 - 13864577
Alignment:
Q  218 aaatagcttatacataaacacttatatga 246  Q
    |||||||||||||||||||||||||||||    
T  13864605 aaatagcttatacataaacacttatatga 13864577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 31740029 - 31740061
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||||||| ||||||||||||    
T  31740029 agcttatatgaaaatagtttgactttattttat 31740061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 37292417 - 37292449
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||||||| ||||||||||||    
T  37292417 agcttatatgaaaatagttttactttattttat 37292449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 43965245 - 43965285
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||||||||| ||||||||||||||||||| | |||||||    
T  43965245 aaatagcttattcataaacacttatatgataagtgcttatg 43965285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 35135732 - 35135817
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||||||||| ||||||||||||  |||||||| | ||||| |||||||||||||||||||||| || || ||||||    
T  35135732 agcttatatgaaaatagtttgactttattttatcttttgttat-agaaatatcttatacataaacacttatatgttaagcacttatg 35135817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 32059659 - 32059733
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| ||||| |||||||||||| || ||||  ||||| ||||||||||||| |||||||||||||    
T  32059659 agcttatatgaaaacagtttgactttattttatcttagtta-caaaaacagcttatacataagcacttatatgata 32059733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 243
Target Start/End: Complemental strand, 32197741 - 32197657
Alignment:
Q  159 tagcttatagaaacagcttatatgaaaatagtttaactttat-tttatgtttgttataaaaaatagcttatacataaacacttata 243  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |  || ||||||| || |||||| |||||| ||||||||||||    
T  32197741 tagcttatggaaacagcttatatgaaaatagtttgactttatataaatttttgtta-aataaatagtttatacgtaaacacttata 32197657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 273
Target Start/End: Original strand, 20982208 - 20982305
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaat 273  Q
    |||||||||||  | || ||||||||||||  ||||||||| ||| |||||||||||||| ||||||||||||| || |||||| ||| | ||||||||    
T  20982208 ttatatgaaaacgggttgactttattttatcctttgttatagaaa-tagcttatacataagcacttatatgataagcacttatgctataagcacttaat 20982305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 26516253 - 26516195
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    ||||||||||||||||| ||||||||||||| ||||||||| ||| | | |||||||||    
T  26516253 aaatagcttatacataagcacttatatgataagcgcttatgctataagcgcttaattaa 26516195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 11684435 - 11684348
Alignment:
Q  159 tagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||  ||| |||||||||||||| ||||| ||| | || ||| ||||||||||||| |||||||||||| | |||||||||||||    
T  11684435 tagcttatgaaaatagcttatatgaaaacagtttcactattttatat-tttgttataaaaa-tagcttatacattagcacttatatgata 11684348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 29014749 - 29014681
Alignment:
Q  180 atgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||| |||| ||||||| |||| | ||||||| |||||||||||| |||||||||||||||    
T  29014749 atgaaaatagtttgacttgattttatcgtttatcataaaaa-tagcttatacatgaacacttatatgata 29014681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 36539746 - 36539671
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaa-aaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| || || |||||||||||| ||| | ||||| |||||||||| |||||| |||||||||||||    
T  36539746 agcttatatgaaaacaggttgactttattttatcttt-tgataaacaaatagcttacacataagcacttatatgata 36539671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 246
Target Start/End: Original strand, 37063146 - 37063217
Alignment:
Q  175 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatga 246  Q
    |||||||||||||||||| ||||||||||||  |||||||| | |||||| |||||||||| || ||||||||    
T  37063146 cttatatgaaaatagtttgactttattttatcttttgttat-agaaatagtttatacataagcatttatatga 37063217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 242
Target Start/End: Original strand, 41277422 - 41277490
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttat 242  Q
    |||||||||||| ||||| |||||||||||| |||| ||| |||||| ||||| ||||||| |||||||    
T  41277422 cttatatgaaaacagtttgactttattttatctttgattacaaaaaaaagcttttacataagcacttat 41277490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 4991048 - 4991098
Alignment:
Q  207 tttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||| |||||||||||| ||||||||||||||||  ||||||||    
T  4991048 tttgttataaaa-atagcttatacacaaacacttatatgataatcgcttatg 4991098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 114
Target Start/End: Original strand, 7550460 - 7550511
Alignment:
Q  63 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaat 114  Q
    |||| ||||||||||| ||||||| ||||| |||||||||||||||| ||||    
T  7550460 ttatccactgacataattacttgtgagactctttgagagagcttatggaaat 7550511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 123
Target Start/End: Complemental strand, 8090039 - 8090004
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatga 123  Q
    |||||||||||||||||||||||||| |||||||||    
T  8090039 agactatttgagagagcttatgaaaacaacttatga 8090004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 11297149 - 11297203
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||| |||||||||||| ||||| |||||||||| ||| |||||| |||||||    
T  11297149 cataaacacttgtaagactgtttgaaagagcttatggaaacaacttaagacatgt 11297203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 121
Target Start/End: Original strand, 12407680 - 12407730
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttat 121  Q
    ||||||||| |||||| ||||  ||||||||||||||||||||| ||||||    
T  12407680 tgacataaacacttgtgagacggtttgagagagcttatgaaaatgacttat 12407730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 248
Target Start/End: Complemental strand, 29365609 - 29365544
Alignment:
Q  182 gaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||| || |||| ||| | ||||||| |||||||||||| | |||||||||||||    
T  29365609 gaaaatagtttaacttgatgttatttttatcataaaaa-tagcttatacatgagcacttatatgata 29365544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 37611174 - 37611224
Alignment:
Q  80 tacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    ||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37611174 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttc 37611224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 37787904 - 37787954
Alignment:
Q  80 tacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    ||||||| ||| | |||||||||||||||||||| ||||| ||||||||||    
T  37787904 tacttgtgagattgtttgagagagcttatgaaaacaacttgtgacatgttc 37787954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 6733966 - 6734037
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||| | |||| ||||||||||| ||| |||||||||| ||| |||| |||||||||||||||||||    
T  6733966 ttatatgaaaacaattta-ctttattttatctttcgttataaaaa-tagattatgcataaacacttatatgata 6734037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 179 - 247
Target Start/End: Original strand, 7096203 - 7096271
Alignment:
Q  179 tatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgat 247  Q
    ||||||||| |||| |||||||||||| ||| |||||| ||| |||||||||||||| ||||| ||||||    
T  7096203 tatgaaaatggtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttgtatgat 7096271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 276
Target Start/End: Complemental strand, 33961668 - 33961600
Alignment:
Q  207 tttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    ||||||||||||  || |||||||| |||||||||||||||| | ||||||  ||| |||||||||||||    
T  33961668 tttgttataaaag-taccttatacaaaaacacttatatgataagtgcttatactataaacacttaattaa 33961600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 40534333 - 40534260
Alignment:
Q  57 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    |||| |||||| ||||||||||| |||||| | ||| |||  ||||||||||| || || ||||||||||||||    
T  40534333 ttgagtttatttactgacataaacacttgtgatactgtttaggagagcttatggaagtagcttatgacatgttc 40534260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 4619828 - 4619768
Alignment:
Q  70 ctgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    |||||||||  ||||| || ||| |||| ||||||||||||||| |||| |||||||||||    
T  4619828 ctgacataagcacttgcaacactgtttgggagagcttatgaaaacaactaatgacatgttc 4619768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 278
Target Start/End: Original strand, 6738522 - 6738582
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaaac 278  Q
    |||||||||||||||||  |||||||||||| | | ||||| ||| ||| |||||||||||    
T  6738522 aaatagcttatacataagtacttatatgataagtgtttatgctataaactcttaattaaac 6738582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 8158371 - 8158403
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||| ||||||||||||||||    
T  8158371 agcttatatgaaaataatttaactttattttat 8158403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 190 - 242
Target Start/End: Complemental strand, 8571353 - 8571302
Alignment:
Q  190 tttaactttattttatgtttgttataaaaaatagcttatacataaacacttat 242  Q
    |||||||||||||| | ||||||||| |||||| | |||||||||||||||||    
T  8571353 tttaactttattttttctttgttata-aaaatatcatatacataaacacttat 8571302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 10152437 - 10152397
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||||||  ||||||||||||||| ||||||||||||||    
T  10152437 agactattttggagagcttatgaaaacaacttatgacatgt 10152397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 130
Target Start/End: Complemental strand, 11406287 - 11406255
Alignment:
Q  98 agagagcttatgaaaataacttatgacatgttc 130  Q
    |||||||||||||||||||||||||| ||||||    
T  11406287 agagagcttatgaaaataacttatgatatgttc 11406255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 127
Target Start/End: Original strand, 12242672 - 12242716
Alignment:
Q  83 ttgtaagactatttgagagagcttatgaaaataacttatgacatg 127  Q
    |||| ||| |||||||||||||||||| ||| |||||||||||||    
T  12242672 ttgtgagattatttgagagagcttatggaaaaaacttatgacatg 12242716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 88 - 128
Target Start/End: Complemental strand, 14980612 - 14980572
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  14980612 agactgtttgagagagcttataaaaatgacttatgacatgt 14980572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 45107620 - 45107548
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||||| |||||||||||| ||| |||| | |||||||||||| |||| |||||||||||||    
T  45107620 cttatatgaaaatagtttgactttattttatttttcttat-agaaatagcttatagataagcacttatatgata 45107548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 48830146 - 48830210
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaaca 237  Q
    |||||||||||||||||||| |||||||||||| |||| ||  | ||||| ||||||||||||||    
T  48830146 agcttatatgaaaatagtttgactttattttatctttggtaatagaaataacttatacataaaca 48830210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 69 - 124
Target Start/End: Original strand, 4033965 - 4034020
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgac 124  Q
    |||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||    
T  4033965 actggcataaacacttgtgagattgtttgagagagcttatgaaaataacttatgac 4034020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 256
Target Start/End: Original strand, 30815707 - 30815789
Alignment:
Q  175 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaa-cacttatatgatacgcgctta 256  Q
    |||||||||||||||||||||||||||||||  ||||||||| |||| |||||| |||||||  | |||||||||| |||||||    
T  30815707 cttatatgaaaatagtttaactttattttatcttttgttatagaaaa-agcttagacataaagtaattatatgataagcgctta 30815789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 240
Target Start/End: Original strand, 1232964 - 1233029
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacactt 240  Q
    |||||| ||||||| ||||||||||||||||| |||||||| ||||| ||||||| |||||||||||    
T  1232964 cttatacgaaaataatttaactttattttatgttttgttat-aaaaacagcttatgcataaacactt 1233029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 256
Target Start/End: Complemental strand, 871046 - 870962
Alignment:
Q  172 cagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgctta 256  Q
    ||||||||||||||| |  || |||| ||||||| ||| |||||||||| ||| |||||||||| ||||||||||||| |||||||    
T  871046 cagcttatatgaaaaaaaattgacttaattttatcttttgttataaaaa-tagtttatacataagcacttatatgataagcgctta 870962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 16980921 - 16980868
Alignment:
Q  73 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 126  Q
    |||||| ||||||| |||||||||||||||||||||| ||| |||||| |||||    
T  16980921 acataagtacttgtgagactatttgagagagcttatggaaacaacttacgacat 16980868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 240
Target Start/End: Complemental strand, 1730881 - 1730825
Alignment:
Q  184 aaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacactt 240  Q
    ||||||||| |||||||||||| |||| |  |||||||||||||||||||| |||||    
T  1730881 aaatagtttgactttattttatctttggttaaaaaaatagcttatacataagcactt 1730825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 182 - 253
Target Start/End: Complemental strand, 48282125 - 48282053
Alignment:
Q  182 gaaaatagtttaactttattttatgtttgttataaa-aaatagcttatacataaacacttatatgatacgcgc 253  Q
    ||||||||||| |||||||||||| ||| || || | ||||||||| ||||||| ||||||||||||| ||||    
T  48282125 gaaaatagtttgactttattttatctttcttttatagaaatagcttttacataagcacttatatgataagcgc 48282053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 49692012 - 49692059
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||| ||||| ||||||||| |||||||||||| ||||||||||||    
T  49692012 acttgtgagactgtttgagagaacttatgaaaatagcttatgacatgt 49692059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 3244883 - 3244829
Alignment:
Q  194 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||||||  || || ||||||||||||||||| |||||| ||||||    
T  3244883 actttattttatgttttgtacaagaaatagcttatacataagcacttacatgata 3244829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 4200229 - 4200144
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||| |  || |||||||||||| ||| |||||||||| || |||||| ||||||||||| |||||| | |||||||    
T  4200229 agcttatatgaaaacaacttgactttattttatcttttgttataaaaa-taacttatatataaacacttagatgataagtgcttatg 4200144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 129
Target Start/End: Complemental strand, 4757458 - 4757400
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    ||||||||| |||||| |||| |||||  ||| |||||||||| |||||||||||||||    
T  4757458 tgacataaacacttgtgagaccatttggcagaacttatgaaaacaacttatgacatgtt 4757400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 83 - 125
Target Start/End: Complemental strand, 6557081 - 6557039
Alignment:
Q  83 ttgtaagactatttgagagagcttatgaaaataacttatgaca 125  Q
    |||| ||||||||||||||| |||||||||||| |||||||||    
T  6557081 ttgtgagactatttgagagaacttatgaaaatagcttatgaca 6557039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 33339500 - 33339565
Alignment:
Q  183 aaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||||| ||||||| ||| | |||| ||| |||||||||||||||||| |||||||||    
T  33339500 aaaatagtttaacttcattttatcttttggtatagaaa-tagcttatacataaacacctatatgata 33339565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 128
Target Start/End: Original strand, 38867783 - 38867838
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||| ||||||  |||| |||||||||||||||| ||||||||||||| ||||    
T  38867783 tgacataaacacttgt--gactgtttgagagagcttatggaaataacttatgatatgt 38867838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 46504322 - 46504387
Alignment:
Q  207 tttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaat 273  Q
    ||||||||||||| ||| ||||| | |||||||||||||||| | ||||||| ||| ||||||||||    
T  46504322 tttgttataaaaa-tagtttatagacaaacacttatatgataagagcttatgctataaacacttaat 46504387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 254
Target Start/End: Complemental strand, 52286678 - 52286597
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgct 254  Q
    ||||||||||||||| |||||||||||||||||  |||||| | | ||||| ||||| ||||| | ||||||||||| |||||    
T  52286678 agcttatatgaaaattgtttaactttattttatcttttgttgt-agaaatatcttattcataagcgcttatatgataagcgct 52286597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 260
Target Start/End: Original strand, 4256112 - 4256200
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttat-atgatacgcgcttatggt 260  Q
    |||||||| ||||||| |||||||||||| |||  |||||| | | ||||||||||||||||||||| ||| |||||| || ||||||||    
T  4256112 agcttatacgaaaataatttaactttattgtatcttttgttgt-agaaatagcttatacataaacacgtatcatgataagcacttatggt 4256200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 128
Target Start/End: Complemental strand, 6262838 - 6262801
Alignment:
Q  91 ctatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||| ||||||||||||||||||||||||| ||||    
T  6262838 ctatttgggagagcttatgaaaataacttatgatatgt 6262801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 7707306 - 7707269
Alignment:
Q  75 ataaatacttgtaagactatttgagagagcttatgaaa 112  Q
    |||||||||||||||| |||||||||||| ||||||||    
T  7707306 ataaatacttgtaagattatttgagagagtttatgaaa 7707269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 28467377 - 28467454
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttata-aaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||| ||| ||||||||||||  ||||||||| | |||||| |||||||||| ||| | |||||||    
T  28467377 agcttatatgaaaataatttgactttattttatcttttgttatacacaaataggttatacataatcacctgtatgata 28467454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 129
Target Start/End: Complemental strand, 28467536 - 28467495
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    |||||||||| ||||| ||||| |||||||||||||||||||    
T  28467536 agactatttgggagagattatggaaataacttatgacatgtt 28467495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 34536278 - 34536221
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||| |||||| ||||| |||||||  ||||||||||| | ||||||||||||    
T  34536278 tgacataaacacttgtgagactgtttgagatggcttatgaaaacagcttatgacatgt 34536221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 242
Target Start/End: Complemental strand, 7357487 - 7357455
Alignment:
Q  210 gttataaaaaatagcttatacataaacacttat 242  Q
    ||||||||||||||||||||||||||| |||||    
T  7357487 gttataaaaaatagcttatacataaacgcttat 7357455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 9656650 - 9656618
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||| ||||||||||||||||    
T  9656650 agcttatatgaaaataatttaactttattttat 9656618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 240
Target Start/End: Complemental strand, 15360894 - 15360827
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacactt 240  Q
    |||||||||||||| ||||| ||||||||||||  |||||||| | ||||| || ||||||||||||||    
T  15360894 agcttatatgaaaacagtttgactttattttatcttttgttat-agaaataactaatacataaacactt 15360827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 17420203 - 17420100
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacactta 271  Q
    ||||||||||||||| |||  |||||||||||| |||  ||||||||| ||| ||||||||||  |||||| || || ||||||||  ||| | ||||||    
T  17420203 agcttatatgaaaattgttcgactttattttatcttttcttataaaaa-tagtttatacataagtacttatgtgctaagcgcttatactataatcactta 17420105  T
Q  272 attaa 276  Q
    |||||    
T  17420104 attaa 17420100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 163 - 258
Target Start/End: Complemental strand, 23895346 - 23895251
Alignment:
Q  163 ttatagaaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||| ||| ||| ||||||| || ||||| | |||||||||| ||| |||||| ||| ||||||||||||||  |||||||||||| | |||||||    
T  23895346 ttataaaaatagcatatatgagaacagtttgaatttattttatcttttgttatagaaa-tagcttatacataataacttatatgataagggcttatg 23895251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Original strand, 1145 - 1219
Alignment:
Q  174 gcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||| |||||||| |||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  1145 gcttatatgagaatagtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttatatgata 1219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 2830 - 2756
Alignment:
Q  174 gcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||| |||||||| |||||||||||| ||| |||||| ||| |||||||||||||| |||||||||||||    
T  2830 gcttatatgagaatagtttgactttattttatcttttgttatagaaa-tagcttatacataagcacttatatgata 2756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 170 - 276
Target Start/End: Original strand, 22684583 - 22684689
Alignment:
Q  170 aacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacac 268  Q
    ||||||||||||||||| | ||| |||||||||||  |||||||||| ||| ||||||||||| || || |||||||||| |||| |||||||| | ||     
T  22684583 aacagcttatatgaaaacaatttgactttattttaccgtttgttatagaaa-tagcttatacagaagcatttatatgataagcgcatatggtataagcaa 22684681  T
Q  269 ttaattaa 276  Q
    ||||||||    
T  22684682 ttaattaa 22684689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 175 - 276
Target Start/End: Complemental strand, 54414950 - 54414846
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtttgtt-ataaaaa--atagcttatacataaacacttatatgatacgcgcttatggtatcaacactta 271  Q
    |||||| |||||||| || |||||||||| | ||| || |||||||  ||||||||||||||| ||||||||||||| ||||||||   || ||||||||    
T  54414950 cttataggaaaatagattgactttattttctctttctttataaaaataatagcttatacataagcacttatatgataagcgcttataacataaacactta 54414851  T
Q  272 attaa 276  Q
    |||||    
T  54414850 attaa 54414846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 248
Target Start/End: Original strand, 28581988 - 28582054
Alignment:
Q  181 tgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||| |||||||||||| ||| |  |||||||||| |||||||||||||||| |||||||    
T  28581988 tgaaaatagtttgactttattttatcttt-tgctaaaaaatagtttatacataaacacttctatgata 28582054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 194 - 276
Target Start/End: Original strand, 8422928 - 8423010
Alignment:
Q  194 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    |||||||||||| ||| ||   ||||||||||||||||||| ||| ||||||||||  | ||||| ||| |||||||||||||    
T  8422928 actttattttatctttttttataaaaatagcttatacataagcacatatatgatacatgattatgctataaacacttaattaa 8423010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 123
Target Start/End: Original strand, 18628501 - 18628555
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatga 123  Q
    ||||||||||| |||||| ||||| |||| ||||||||||||||| |||||||||    
T  18628501 actgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttatga 18628555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 27123305 - 27123359
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  27123305 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 27123359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 71 - 128
Target Start/End: Complemental strand, 2996693 - 2996636
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||  |||| | ||||| |||||||||||||||||||| ||||||||||||||    
T  2996693 tgacataagcacttttgagactgtttgagagagcttatgaaaacaacttatgacatgt 2996636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 44319949 - 44319865
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||| ||||  |||||||||||| ||| |||| | |||||| |||||||| | ||||||||||||| | |||||||    
T  44319949 agcttatatgaaaacagttcgactttattttatcttttttat-agaaatagtttatacatgagcacttatatgataagtgcttatg 44319865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 234
Target Start/End: Original strand, 437504 - 437564
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataa 234  Q
    |||||||||| | | |||||||||||||||| ||| | |||||||||||||||||||||||    
T  437504 cttatatgaacacaatttaactttattttatcttttgctataaaaaatagcttatacataa 437564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 24193583 - 24193500
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||||||||||| | |||||| ||| ||| |||||| || |||||||||||  |||||||||||| ||| |||||    
T  24193583 cttatatgaaaatagtttaactctgttttatattttgttgtaaaaa-taacttatacataagtacttatatgataagcgtttatg 24193500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 89 - 128
Target Start/End: Complemental strand, 27725316 - 27725277
Alignment:
Q  89 gactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||| |||||||||||||||| ||||||||||||||||||    
T  27725316 gactgtttgagagagcttatggaaataacttatgacatgt 27725277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 126
Target Start/End: Original strand, 33534119 - 33534174
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 126  Q
    |||||||| ||||||| ||| |||||||||||||||||||||| || || ||||||    
T  33534119 tgacataagtacttgtgagagtatttgagagagcttatgaaaacaaattgtgacat 33534174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 42321952 - 42322018
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttat 242  Q
    ||||||||||| | ||| ||||||||||||  |||||||||||| ||||||||| |||||||||||||    
T  42321952 ttatatgaaaacaatttgactttattttatcatttgttataaaa-atagcttattcataaacacttat 42322018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 54325107 - 54325182
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| ||||| |||||||||||| |||  ||  | |||||| ||||||| || |||||||||||||    
T  54325107 agcttatatgaaaacagtttgactttattttatcttttgtaatagaaatagtttatacacaagcacttatatgata 54325182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 55437356 - 55437429
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||| ||| ||||||||||||  ||||||| | |||||||||||| |||| | |||||||||||    
T  55437356 agcttatatgaaaataatttgactttattttat-attgttat-agaaatagcttatagataatcgcttatatgata 55437429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 248
Target Start/End: Original strand, 32920491 - 32920543
Alignment:
Q  194 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||| || ||||||||| ||||||||| |||||||||||||||||||    
T  32920491 actttattttatctt-gttataaaa-atagcttatccataaacacttatatgata 32920543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 246
Target Start/End: Complemental strand, 47970310 - 47970245
Alignment:
Q  181 tgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatga 246  Q
    |||||||||||| |||| ||||||| ||| |||||| ||| |||||||||||||| |||||||||||    
T  47970310 tgaaaatagtttgacttcattttatcttttgttatagaaa-tagcttatacataagcacttatatga 47970245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 1554968 - 1555017
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    ||||| |||||| |||||||||  ||||||||||| ||||||||||||||    
T  1554968 acttgcaagactgtttgagagaatttatgaaaatagcttatgacatgttc 1555017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 245
Target Start/End: Complemental strand, 4071882 - 4071811
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatg 245  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | |||||| ||||| |||||||||||||||    
T  4071882 agcttatatgaaaataatttgactttattttatcttttgttat-agaaatag-ttatatataaacacttatatg 4071811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 205
Target Start/End: Original strand, 5219573 - 5219602
Alignment:
Q  176 ttatatgaaaatagtttaactttattttat 205  Q
    ||||||||||||||||||||||||||||||    
T  5219573 ttatatgaaaatagtttaactttattttat 5219602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 23819087 - 23819015
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||| ||||| |||  ||||||| ||||||||  ||| || ||||||||||||||||| |||||||    
T  23819087 cttatatgaaaacagtttgactacattttatatttgttatggaaa-taacttatacataaacacttgtatgata 23819015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 248
Target Start/End: Complemental strand, 36734890 - 36734818
Alignment:
Q  176 ttatatgaaaatagtttaactttatttta-tgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||||||| |||||||||||   |||||||| | ||| || |||||||||| |||||||||||||    
T  36734890 ttatatgaaaatagtttgactttattttaccttttgttat-agaaagagattatacataagcacttatatgata 36734818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 253
Target Start/End: Complemental strand, 49219139 - 49219059
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgc 253  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | ||||| ||||||| ||| |||| |||||||| ||||    
T  49219139 agcttatatgaaaataatttgactttattttatattttgttat-agaaataacttatacctaaccactcatatgataagcgc 49219059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Complemental strand, 52428766 - 52428733
Alignment:
Q  90 actatttgagagagcttatgaaaataacttatga 123  Q
    |||||||||||||||||||||||| |||||||||    
T  52428766 actatttgagagagcttatgaaaacaacttatga 52428733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Complemental strand, 54986400 - 54986348
Alignment:
Q  194 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgat 247  Q
    ||||||| |||| ||||||||| ||| ||||||||||||||| |||||||||||    
T  54986400 actttatcttatttttgttatagaaa-tagcttatacataaaaacttatatgat 54986348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 215
Target Start/End: Complemental strand, 12162947 - 12162911
Alignment:
Q  179 tatgaaaatagtttaactttattttatgtttgttata 215  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  12162947 tatgaaaataatttgactttattttatgtttgttata 12162911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 21157768 - 21157693
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||| ||||||| ||||| |||||| |||||  |||||||| |||| ||||| |||||||| |||||||||||||    
T  21157768 agcttacatgaaaacagtttgactttagtttatactttgttatcaaaa-tagctgatacataagcacttatatgata 21157693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 276
Target Start/End: Complemental strand, 30024700 - 30024597
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacactta 271  Q
    |||||||||||||| | ||| ||||||||||||  |||||||| | ||||| ||||| |||||  ||||||||||||  ||||| |  ||| ||||||||    
T  30024700 agcttatatgaaaacaattttactttattttatcttttgttat-agaaataacttatgcataagtacttatatgataaacgcttctactataaacactta 30024602  T
Q  272 attaa 276  Q
    |||||    
T  30024601 attaa 30024597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 246
Target Start/End: Complemental strand, 32724118 - 32724046
Alignment:
Q  174 gcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatga 246  Q
    ||||||||||||||||||| |||||||||||| |||  ||  | |||||| ||| |||||| |||| ||||||    
T  32724118 gcttatatgaaaatagtttgactttattttatcttttgtaatagaaatagattagacataagcactgatatga 32724046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 52645655 - 52645623
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacg 250  Q
    |||||||| ||||||||||||||||||||||||    
T  52645655 aaatagctcatacataaacacttatatgatacg 52645623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 224 - 276
Target Start/End: Complemental strand, 55599115 - 55599063
Alignment:
Q  224 cttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    |||||| |||||||||||| ||||||||||||||| |||   |||||||||||    
T  55599115 cttatatataaacacttatgtgatacgcgcttatgctatatgcacttaattaa 55599063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 137
Target Start/End: Complemental strand, 56007789 - 56007734
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttcgattgtc 137  Q
    |||||||||||| |||||||||||| ||  || |||||||||||||| |||||||||    
T  56007789 acttgtaagactgtttgagagagctaatacaagtaacttatgacatg-tcgattgtc 56007734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 21130733 - 21130675
Alignment:
Q  70 ctgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||||||||||| ||||| |||||||||||||||| ||||| ||| ||||||||    
T  21130733 ctgacataaatacttgtgagactgtttgagagagcttatggaaatagcttttgacatgt 21130675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 34788497 - 34788581
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    |||||||||| ||| ||||| |||||||||||| |||| |   ||||||||||||||| ||| || |||||||||| ||||||||    
T  34788497 agcttatatggaaacagtttgactttattttatctttggtcataaaaatagcttatacgtaagcatttatatgataagcgcttat 34788581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 256
Target Start/End: Complemental strand, 2699304 - 2699223
Alignment:
Q  175 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgctta 256  Q
    |||||||||||||||||||||||||||||||  |||||| | | ||||| |||||| ||| |||| ||||||||| |||||||    
T  2699304 cttatatgaaaatagtttaactttattttatattttgttgt-agaaataacttatatatagacacgtatatgataggcgctta 2699223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 28769409 - 28769494
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||| ||||||||||| |||| ||||||| ||||||||||  || |||||||||||||| || |||||||||| || ||||||    
T  28769409 agcttataagaaaatagtttgacttaattttatagtttgttataggaa-tagcttatacataagcatttatatgataagcacttatg 28769494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 241
Target Start/End: Complemental strand, 4558794 - 4558730
Alignment:
Q  177 tatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacactta 241  Q
    |||||||||||| ||||||||||||||||  ||| |||| | ||||||||||||||||||||||||    
T  4558794 tatatgaaaataatttaactttattttatcttttattat-agaaatagcttatacataaacactta 4558730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 248
Target Start/End: Complemental strand, 10722629 - 10722556
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| ||| | |||||||||| ||||||||| |||  || ||||||| || |||||||||||||    
T  10722629 cttatatgaaaataattttagtttattttatctttgttatataaataagattatacacaagcacttatatgata 10722556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 234
Target Start/End: Complemental strand, 26215510 - 26215435
Alignment:
Q  159 tagcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataa 234  Q
    ||||||||  |||||  ||||| ||||||||||||||||||||||||  |||||||| | |||||||||||||||||    
T  26215510 tagcttatgaaaacatattatacgaaaatagtttaactttattttatcttttgttat-agaaatagcttatacataa 26215435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 241
Target Start/End: Original strand, 2595084 - 2595134
Alignment:
Q  190 tttaactttattttatgtttgttataaaaaatagcttatacataaacactta 241  Q
    |||||||||||||||| || ||||||||||| | ||||||||||||||||||    
T  2595084 tttaactttattttatctt-gttataaaaaaaaccttatacataaacactta 2595134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 227
Target Start/End: Original strand, 42237492 - 42237547
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagctta 227  Q
    |||||||||||||| | ||||||||||||||||  |||||||||||||| ||||||    
T  42237492 agcttatatgaaaacaatttaactttattttatcttttgttataaaaaagagctta 42237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 9700118 - 9700064
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||| |||||| ||||||||||||||||||| |||||  || |||||||||||    
T  9700118 cataaacacttgtgagactatttgagagagcttgtgaaatcaatttatgacatgt 9700064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 14949983 - 14949929
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||| | |||| ||||| |||  ||||||||||||||||||||||||||||||    
T  14949983 cataaacatttgtgagactgtttaggagagcttatgaaaataacttatgacatgt 14949929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 26717254 - 26717182
Alignment:
Q  174 gcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||| |||||||||||| ||||||||||||  ||||||| |||| |||||||| || || |||||||||||||    
T  26717254 gcttatttgaaaatagtttgactttattttat-cttgttat-aaaattagcttattcagaagcacttatatgata 26717182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 31875674 - 31875732
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    |||||||||||| |||| ||||||||||||| ||||||||| ||| ||| ||| |||||    
T  31875674 aaatagcttatagataagcacttatatgataagcgcttatgctataaacgcttcattaa 31875732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 273
Target Start/End: Original strand, 3645886 - 3645986
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttg-ttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacactta 271  Q
    |||||||||||||||||||| | ||| |||||| |||  ||||| ||| ||||||||||| || |||||||||||||  | |||||| ||| |||| |||    
T  3645886 agcttatatgaaaatagtttgattttgttttatattttcttatagaaa-tagcttatacacaagcacttatatgataaacacttatgctataaacattta 3645984  T
Q  272 at 273  Q
    ||    
T  3645985 at 3645986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 11056737 - 11056821
Alignment:
Q  173 agcttatatgaaaatagtttaacttta-ttttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    ||||||||||||||||||| ||||||| ||||   |||||||| | |||||||| || ||| ||||||||||||||| | ||||||    
T  11056737 agcttatatgaaaatagttcaactttatttttccttttgttat-agaaatagctcatgcatgaacacttatatgataagagcttat 11056821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 90 - 123
Target Start/End: Original strand, 27412851 - 27412884
Alignment:
Q  90 actatttgagagagcttatgaaaataacttatga 123  Q
    |||||||||||||||||||||||| |||||||||    
T  27412851 actatttgagagagcttatgaaaacaacttatga 27412884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 29262942 - 29263016
Alignment:
Q  171 acagcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatga 246  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||| |||||| |  ||| ||||||||||||||||    
T  29262942 acagcttatatgaaaataatttgactttattttatcttctattatagaaaataac--atatataaacacttatatga 29263016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 130
Target Start/End: Original strand, 30191101 - 30191150
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    |||||| ||||| |||| ||||||||||| ||| ||||||||||||||||    
T  30191101 acttgttagactgtttgggagagcttatggaaacaacttatgacatgttc 30191150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Complemental strand, 6918988 - 6918956
Alignment:
Q  216 aaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||||||||| |||||||||||||    
T  6918988 aaaaatagcttatacataagcacttatatgata 6918956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 113
Target Start/End: Complemental strand, 10923730 - 10923674
Alignment:
Q  57 ttgactttattcactgacataaatacttgtaagactatttgagagagcttatgaaaa 113  Q
    |||| |||||| | || |||||| ||||||||||| ||||||||||| |||||||||    
T  10923730 ttgagtttatttagtggcataaacacttgtaagacaatttgagagagtttatgaaaa 10923674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 11376825 - 11376765
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    ||||| |||| | ||||| |||||||||| |||| |||||||||||| ||| |||||||||    
T  11376825 actgatataagttcttgtgagactatttgggagaacttatgaaaatagcttgtgacatgtt 11376765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 11952478 - 11952510
Alignment:
Q  216 aaaaatagcttatacataaacacttatatgata 248  Q
    |||||| ||||||||||||||||||||||||||    
T  11952478 aaaaatggcttatacataaacacttatatgata 11952510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 31915245 - 31915297
Alignment:
Q  73 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgaca 125  Q
    |||||||||||||| ||||| ||||||| |||||||  ||| |||||||||||    
T  31915245 acataaatacttgtgagactgtttgagaaagcttatacaaacaacttatgaca 31915297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 248
Target Start/End: Complemental strand, 40357903 - 40357824
Alignment:
Q  169 aaacagcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||| | |||||||||| ||| |||||||||||| ||| ||||||  ||  |||||||||||||| ||||||||||||    
T  40357903 aaacagcatttatgaaaataattttactttattttatcttttgttatatcaag-agcttatacataaatacttatatgata 40357824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 256
Target Start/End: Complemental strand, 40428555 - 40428471
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt--gttataaaaaatagcttatacataaacacttatatgatacgcgctta 256  Q
    |||||||||||||||| |||||||||||||||| |||  |||||| ||||| |||||| ||||| ||||||||| ||| |||||||    
T  40428555 agcttatatgaaaataatttaactttattttattttttcgttatagaaaat-gcttatccataatcacttatataataggcgctta 40428471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 49060540 - 49060465
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||| |||||| ||| |||||||||||| ||| |||||| ||| ||||||||||||||| ||||||||||||    
T  49060540 agcttatataaaaataatttgactttattttattttttgttatagaaa-tagcttatacataaatacttatatgata 49060465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 3500913 - 3500974
Alignment:
Q  69 actgacataaatacttg--taagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||||| |||||  |||| ||||||| ||||||||||| ||||||||||||||||||    
T  3500913 actgacataaaaacttgcgtaagtctatttgtgagagcttatggaaataacttatgacatgt 3500974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 129
Target Start/End: Original strand, 22387838 - 22387904
Alignment:
Q  63 ttattcactgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    ||||| ||||||||||| || ||| ||||| |||| ||||||||||||||| |||||||| ||||||    
T  22387838 ttatttactgacataaacacgtgtgagactgtttgggagagcttatgaaaacaacttatggcatgtt 22387904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 31149739 - 31149705
Alignment:
Q  92 tatttgagagagcttatgaaaataacttatgacat 126  Q
    |||||||||||||||||||||||||||||||||||    
T  31149739 tatttgagagagcttatgaaaataacttatgacat 31149705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 126
Target Start/End: Complemental strand, 31168031 - 31167997
Alignment:
Q  92 tatttgagagagcttatgaaaataacttatgacat 126  Q
    |||||||||||||||||||||||||||||||||||    
T  31168031 tatttgagagagcttatgaaaataacttatgacat 31167997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 248
Target Start/End: Original strand, 45593791 - 45593864
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||| ||||| ||||||||||||| |||||||  | ||||||||||||||||| || ||||||||||    
T  45593791 cttatatgaaaacagtttgactttattttatgttttgtta-cagaaatagcttatacataagcatttatatgata 45593864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 276
Target Start/End: Original strand, 26935620 - 26935723
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacactta 271  Q
    |||| ||||||||| | |||||| |||||||||  |||||||||||| |||||||| ||| || |||||||||||||  | |||||||||| | | ||||    
T  26935620 agctcatatgaaaacaatttaaccttattttatcatttgttataaaa-atagcttacacaaaagcacttatatgataatctcttatggtataagcgctta 26935718  T
Q  272 attaa 276  Q
    |||||    
T  26935719 attaa 26935723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 27389338 - 27389298
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  27389338 aaatagcttatacataaacacttatatgataagcacttatg 27389298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 36370669 - 36370595
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacat-aaacacttatatgata 248  Q
    ||||||| |||||| |||||||||| ||||||| || |||||| |||||||||||||||| |||||| |||||||||    
T  36370669 agcttatgtgaaaacagtttaactt-attttatctt-gttatagaaaatagcttatacataaaacacatatatgata 36370595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 113
Target Start/End: Original strand, 44151424 - 44151468
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaa 113  Q
    |||||||||| ||||||| ||| ||||||||||||||||||||||    
T  44151424 actgacataagtacttgtgagattatttgagagagcttatgaaaa 44151468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 248
Target Start/End: Complemental strand, 45078265 - 45078218
Alignment:
Q  200 ttttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||| ||||||||||||| |||||||||||||| |||||||||||||    
T  45078265 ttttatttttgttataaaaa-tagcttatacataagcacttatatgata 45078218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 248
Target Start/End: Complemental strand, 47004082 - 47004012
Alignment:
Q  178 atatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||| |||||||||| |||||||||||| | |||||||| ||| ||||||| | ||||||||||||||||||    
T  47004082 atataaaaatagtttgactttattttatctattgttatagaaa-tagcttacatataaacacttatatgata 47004012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 28844441 - 28844383
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    ||||| ||||||||||| ||||||||  ||| ||||||||| ||| |||||||||||||    
T  28844441 aaatatcttatacataagcacttatacaataagcgcttatgctataaacacttaattaa 28844383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 128
Target Start/End: Complemental strand, 44808266 - 44808221
Alignment:
Q  83 ttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||| ||||| ||||| ||| |||||||||||||||||||||||||    
T  44808266 ttgtcagactgtttgatagaccttatgaaaataacttatgacatgt 44808221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 1431423 - 1431463
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||| ||||||||||||||||||||||||| || ||||||    
T  1431423 aaataacttatacataaacacttatatgataagcacttatg 1431463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 129
Target Start/End: Complemental strand, 8094416 - 8094368
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    |||||| |||||||||||||||  ||||||||| | |||||||||||||    
T  8094416 acttgtgagactatttgagagattttatgaaaacagcttatgacatgtt 8094368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 22759186 - 22759111
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| | |||  ||||||||||| ||| |||||| ||| ||||||| |||||||| |||||||||||    
T  22759186 agcttatatgaaaacaattttcctttattttatcttttgttatacaaa-tagcttaaacataaacgcttatatgata 22759111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 244
Target Start/End: Original strand, 27481364 - 27481435
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatat 244  Q
    |||||||||| ||| ||||| ||||  ||||||  ||||||||| ||| ||||||||||||||||||||||||    
T  27481364 agcttatatggaaacagtttgacttcgttttatcctttgttatagaaa-tagcttatacataaacacttatat 27481435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 258
Target Start/End: Original strand, 27517969 - 27518005
Alignment:
Q  222 agcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||||||||||||||||||||||||| || ||||||    
T  27517969 agcttatacataaacacttatatgataagcacttatg 27518005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 255
Target Start/End: Complemental strand, 30496701 - 30496622
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgctt 255  Q
    ||||| ||||| | ||| |||||||||||| ||| |||||| ||| ||| |||||||||||||||||| ||||| ||||||    
T  30496701 ttatacgaaaacaatttgactttattttatattttgttatagaaa-tagtttatacataaacacttatgtgatatgcgctt 30496622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 258
Target Start/End: Complemental strand, 31341192 - 31341109
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||||| |||  ||||| |||||||||||| ||| |||||| ||| |||||||||||||| || ||| |||||| |||||||||    
T  31341192 cttatataaaaccagtttgactttattttatcttttgttatacaaa-tagcttatacataagcatttagatgataagcgcttatg 31341109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 254
Target Start/End: Complemental strand, 35536105 - 35536026
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgatacgcgct 254  Q
    |||||||||||| | ||| |||||||||||| || ||||||| ||| |||||||||||||| |  |||||||||| |||||    
T  35536105 cttatatgaaaacaatttgactttattttatcttatgttatagaaa-tagcttatacataagcctttatatgataagcgct 35536026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 36538025 - 36537969
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    |||||| |||||| ||| | ||||||||| |||||| ||| ||||||||||||||||    
T  36538025 cataaacacttgtgagattgtttgagagaacttatggaaacaacttatgacatgttc 36537969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 39551618 - 39551693
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| ||||| |||||| | ||| ||| |||||| ||| |||||||||| |||| ||||||||||||    
T  39551618 agcttatatgaaaacagttttactttagtatatcttttgttatagaaa-tagcttatacttaaatacttatatgata 39551693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 40689056 - 40689088
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||| ||||||||||||||||    
T  40689056 agcttatatgaaaataatttaactttattttat 40689088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 28)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 2034494 - 2034575
Alignment:
Q  158 ttagcttatagaaacagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacactt 240  Q
    |||||||||  ||| ||||||||||||| |||||| |||||||||||| |||||| | ||||| ||||||||||||| |||||    
T  2034494 ttagcttatgaaaaaagcttatatgaaagtagtttgactttattttatctttgttgt-aaaaacagcttatacataagcactt 2034575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 7351678 - 7351763
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||| |||||||||||||||||| |||| |||| | |||||| |||||||||| || |||||||||| | |||||||    
T  7351678 agcttatatgaaaacagtttaactttattttatagtttattat-ataaatagtttatacataagcatttatatgataagagcttatg 7351763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 32513825 - 32513752
Alignment:
Q  172 cagcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatga 246  Q
    ||||||||||| ||||||||| |||||||||||| |||||||| | ||||| ||||| |||||||||| ||||||    
T  32513825 cagcttatatggaaatagtttgactttattttatttttgttat-agaaataacttatgcataaacactaatatga 32513752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 10452430 - 10452505
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||||||| | ||||||||||  |||||||| | ||||||||||||||||| |||| ||||||||    
T  10452430 agcttatatgaaaatagtttgattttattttatattttgttat-agaaatagcttatacataagcactgatatgata 10452505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 128
Target Start/End: Original strand, 1669758 - 1669805
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||||||||    
T  1669758 acttgtaagactaattgggagagcttatgaaaacaacttatgacatgt 1669805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 257
Target Start/End: Original strand, 3217262 - 3217344
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    |||||||||||||| ||| |||||||||||| || | |||  ||||||||||||||||||| |||||||||||||  |||||||    
T  3217262 cttatatgaaaataatttgactttattttatcttctctta-caaaaatagcttatacataagcacttatatgataatcgcttat 3217344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 83 - 130
Target Start/End: Original strand, 20368142 - 20368189
Alignment:
Q  83 ttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    ||||||||||||||| |||| |||||||||| ||||||||||||||||    
T  20368142 ttgtaagactatttgggagaacttatgaaaacaacttatgacatgttc 20368189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 128
Target Start/End: Original strand, 2460104 - 2460158
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||| ||||||| ||||| |||||||||||||||| ||| ||||||||||||||    
T  2460104 cataagtacttgtgagactgtttgagagagcttatggaaacaacttatgacatgt 2460158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 276
Target Start/End: Complemental strand, 32975933 - 32975875
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    ||||| ||||||||||||||||||||||| | ||||||||| ||| ||| |||||||||    
T  32975933 aaataacttatacataaacacttatatgagaagcgcttatgctataaacgcttaattaa 32975875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 205
Target Start/End: Complemental strand, 1402996 - 1402964
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||||||||||||||||||||    
T  1402996 agcttatatgaaaatagtttaactttattttat 1402964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 10032571 - 10032496
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||| ||||||  |||||||| |  | |||||||||||| ||||||||||||||||| ||||||||||    
T  10032571 agcttatatgaaattagtttgcctttatttcacctattgttataaaaa-tagcttatacataaacatttatatgata 10032496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 27693392 - 27693448
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    ||||| ||||||| |||||||||||||||  ||||| ||| ||||||||||||||||    
T  27693392 cataagtacttgtgagactatttgagagaatttatggaaacaacttatgacatgttc 27693448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 9833168 - 9833270
Alignment:
Q  174 gcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaa 272  Q
    ||||||| ||||| ||||| |||||||||||| | |||| ||| ||| || |||||| | || |||||||||||||  |||||||| ||| |||||||||    
T  9833168 gcttataagaaaacagtttgactttattttatttattgtaatagaaa-tatcttatagagaagcacttatatgataaacgcttatgttataaacacttaa 9833266  T
Q  273 ttaa 276  Q
    ||||    
T  9833267 ttaa 9833270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 191 - 258
Target Start/End: Complemental strand, 24332924 - 24332858
Alignment:
Q  191 ttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    ||||||||||||||| ||| ||| || ||||||||||||||||| |||||||| |||| | |||||||    
T  24332924 ttaactttattttatctttttta-aagaaatagcttatacataatcacttataggataagtgcttatg 24332858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 128
Target Start/End: Original strand, 32577934 - 32577993
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||| ||||||||||||  | | | |||||||||||||||||||| ||||||||||||||    
T  32577934 actggcataaatacttgggacattgtttgagagagcttatgaaaacaacttatgacatgt 32577993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 258
Target Start/End: Complemental strand, 22742366 - 22742281
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatg-tttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||| | ||| ||||||||||||  ||||||||| ||| ||||||||| ||||  ||||||| |||| |||||||||    
T  22742366 agcttatatgaaaacaatttgactttattttatcctttgttatacaaa-tagcttatagataagaacttatacgataagcgcttatg 22742281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 207 - 245
Target Start/End: Original strand, 30817671 - 30817709
Alignment:
Q  207 tttgttataaaaaatagcttatacataaacacttatatg 245  Q
    |||||||||||||||||| ||||||||| ||||||||||    
T  30817671 tttgttataaaaaatagcatatacataagcacttatatg 30817709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 128
Target Start/End: Complemental strand, 30863363 - 30863309
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||| |||||| ||||| ||||  |||||||||||||| ||||||||||||||    
T  30863363 cataaacacttgttagactctttggtagagcttatgaaaacaacttatgacatgt 30863309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 30865601 - 30865547
Alignment:
Q  73 acataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatg 127  Q
    ||||||| |||||| ||||  ||| |||||||||||| |||||||||||||||||    
T  30865601 acataaacacttgttagacagtttaagagagcttatggaaataacttatgacatg 30865547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 218 - 276
Target Start/End: Original strand, 33068676 - 33068734
Alignment:
Q  218 aaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaattaa 276  Q
    ||||| ||||||||||| || |||| ||||| ||||||||| ||| |||||||||||||    
T  33068676 aaataacttatacataagcatttatttgataagcgcttatgctataaacacttaattaa 33068734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 27693507 - 27693581
Alignment:
Q  171 acagcttatatgaaaatagtttaactttattttatgtt-tgttataaaaaatagcttatacataaacacttatatga 246  Q
    |||||||||||||||||| ||| |||||||||||| || | ||||| |||||| |  ||| ||||||||||||||||    
T  27693507 acagcttatatgaaaataatttgactttattttatcttctattatagaaaataac--atatataaacacttatatga 27693581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 126
Target Start/End: Complemental strand, 27857480 - 27857423
Alignment:
Q  69 actgacataaatacttgtaagactatttgagagagcttatgaaaataacttatgacat 126  Q
    ||||||||| | |||||| | ||| |||| ||||||||||||||| ||||||||||||    
T  27857480 actgacatagacacttgtgaaactgtttgggagagcttatgaaaacaacttatgacat 27857423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 128
Target Start/End: Complemental strand, 32917313 - 32917260
Alignment:
Q  75 ataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    ||||| |||||| ||||| |||| ||||||||||| ||| ||||||||||||||    
T  32917313 ataaacacttgtgagactgtttgggagagcttatggaaacaacttatgacatgt 32917260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 244
Target Start/End: Original strand, 33911366 - 33911422
Alignment:
Q  188 agtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatat 244  Q
    ||||||||||||||| || ||| |||||||||| ||| ||||||||||||||||||||    
T  33911366 agtttaactttatttgatcttttgttataaaaa-tagattatacataaacacttatat 33911422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 2027479 - 2027523
Alignment:
Q  176 ttatatgaaaatagtttaactttattttat-gtttgttataaaaa 219  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||    
T  2027479 ttatatgaaaatagtttgactttattttatcttttgttataaaaa 2027523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 8010349 - 8010282
Alignment:
Q  180 atgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||| ||| || ||||||||||||  |||||||| ||| |||||||||| ||| |||||||||||||    
T  8010349 atgaaagtagattgactttattttattgttgttatagaaa-tagcttatacctaagcacttatatgata 8010282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 219
Target Start/End: Original strand, 28660833 - 28660877
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatgt-ttgttataaaaa 219  Q
    ||||||||||||| |||||||||||||||| | ||||||||||||    
T  28660833 ttatatgaaaataatttaactttattttatctattgttataaaaa 28660877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 31668474 - 31668430
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataact 118  Q
    |||||| |||||| |||||||| ||||||||||||||||| ||||    
T  31668474 cataaacacttgtgagactattagagagagcttatgaaaacaact 31668430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 81 - 129
Target Start/End: Original strand, 2175809 - 2175857
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    |||||||||||||||||||| || ||||||||| |||||||||||||||    
T  2175809 acttgtaagactatttgagatagtttatgaaaacaacttatgacatgtt 2175857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 175 - 250
Target Start/End: Original strand, 25459696 - 25459770
Alignment:
Q  175 cttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacg 250  Q
    ||||||||||||||||||| |||||| |||| |||||||| || ||||| ||||||| || |||||| ||||||||    
T  25459696 cttatatgaaaatagtttatctttatattatctttgttat-aacaatagtttatacaaaagcacttacatgatacg 25459770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 248
Target Start/End: Original strand, 16790432 - 16790501
Alignment:
Q  179 tatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||| ||| | |||||||||| | ||||||||||| ||||||||||||||| |||||||||||||    
T  16790432 tatgaaaataatttgattttattttatctgttgttataaaa-atagcttatacataagcacttatatgata 16790501  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 25182947 - 25182992
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacat 126  Q
    |||||| ||||| |||||||||||||||||||| ||||||||||||    
T  25182947 acttgtgagactgtttgagagagcttatgaaaacaacttatgacat 25182992  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 25183058 - 25183134
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttataca-taaacacttatatgata 248  Q
    |||| |||||||||||| |||||||||||| ||  |||||||| |||||||| ||||||| |||||||||||||||||    
T  25183058 agctcatatgaaaatagcttaactttatttaatcttttgttat-aaaaatagtttatacattaaacacttatatgata 25183134  T

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Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 258
Target Start/End: Original strand, 28842971 - 28843012
Alignment:
Q  217 aaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||||||||||||| ||||||||||||| |||||||||    
T  28842971 aaaatagcttatacataagcacttatatgataagcgcttatg 28843012  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 38462277 - 38462206
Alignment:
Q  177 tatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||| ||||| |||||||||||| ||| | |||| ||| ||||||||| ||||||||||||||||||    
T  38462277 tatatgaaaacagtttgactttattttatcttttggtatagaaa-tagcttataaataaacacttatatgata 38462206  T

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Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 248
Target Start/End: Original strand, 49772781 - 49772813
Alignment:
Q  216 aaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||||||||||||||||||||||    
T  49772781 aaaaatagcttatacataaacacttatatgata 49772813  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 128
Target Start/End: Complemental strand, 1810087 - 1810040
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacatgt 128  Q
    |||||| |||||||||||||||||||| | ||| ||||||||||||||    
T  1810087 acttgtgagactatttgagagagcttacggaaacaacttatgacatgt 1810040  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 175 - 257
Target Start/End: Complemental strand, 22232824 - 22232742
Alignment:
Q  175 cttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttat 257  Q
    |||||||||||| ||||| ||||||||||||  |||||||| | ||||||||||||||| | || |||||||||| | ||||||    
T  22232824 cttatatgaaaacagtttgactttattttatcatttgttat-ataaatagcttatacatgagcatttatatgataagagcttat 22232742  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 255
Target Start/End: Complemental strand, 28779356 - 28779274
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgt-ttgttataaaaaatagcttatacataaacacttatatgatacgcgctt 255  Q
    |||||||||||||||||||| ||||||||| || |  |||||| ||||| |||||||||| || || |||||||||| ||||||    
T  28779356 agcttatatgaaaatagtttgactttatttcatctgatgttat-aaaaacagcttatacaaaagcaattatatgataagcgctt 28779274  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 32703138 - 32703063
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacacttatatgata 248  Q
    |||||||||||||| | ||| | |||||||||| |||  ||  | |||||||||||||||||||| ||||||||||    
T  32703138 agcttatatgaaaacaatttgagtttattttatcttttataatagaaatagcttatacataaacatttatatgata 32703063  T

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Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 88 - 127
Target Start/End: Original strand, 40880915 - 40880954
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatgacatg 127  Q
    ||||| |||||||||||||||||||| |||||||||||||    
T  40880915 agactgtttgagagagcttatgaaaacaacttatgacatg 40880954  T

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Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 47584570 - 47584523
Alignment:
Q  71 tgacataaatacttgtaagactatttgagagagcttatgaaaataact 118  Q
    ||||||||  |||||| |||||||||||||||||||||||||| ||||    
T  47584570 tgacataagcacttgtgagactatttgagagagcttatgaaaagaact 47584523  T

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Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 129
Target Start/End: Complemental strand, 50016003 - 50015948
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgtt 129  Q
    |||||| |||||| ||||| ||||||||| |||||||||| ||| |||||||||||    
T  50016003 cataaacacttgtgagactgtttgagagaacttatgaaaagaacgtatgacatgtt 50015948  T

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Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 276
Target Start/End: Original strand, 12985399 - 12985497
Alignment:
Q  179 tatgaaaatagtttaactttattttatgtttgttataaaaaatagcttatacataaacact---tatatgatacgcgcttatggtatcaacacttaatta 275  Q
    |||||||| |||||| ||||||||||| |||||||| | ||| | ||||||||||||||||   || |||||| |||||||| | || ||||||||||||    
T  12985399 tatgaaaacagtttatctttattttat-tttgttat-agaaacaacttatacataaacacttactacatgataagcgcttatagaataaacacttaatta 12985496  T

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Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 21574593 - 21574551
Alignment:
Q  88 agactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    ||||| |||| ||||||||||||||| ||||||||||||||||    
T  21574593 agactgtttgggagagcttatgaaaacaacttatgacatgttc 21574551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 122
Target Start/End: Complemental strand, 47132101 - 47132063
Alignment:
Q  84 tgtaagactatttgagagagcttatgaaaataacttatg 122  Q
    ||||||||||||||||||| |||||||||| ||||||||    
T  47132101 tgtaagactatttgagagaacttatgaaaacaacttatg 47132063  T

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Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 130
Target Start/End: Complemental strand, 50004787 - 50004713
Alignment:
Q  57 ttgactttattcactgacataaatacttgtaagactatttgagagagc-ttatgaaaataacttatgacatgttc 130  Q
    |||| |||||| ||||||||||  | |||||||||| |||||||| || ||||| ||| ||||||||||||||||    
T  50004787 ttgagtttatttactgacataagcaattgtaagactgtttgagagggccttatggaaacaacttatgacatgttc 50004713  T

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Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 233
Target Start/End: Complemental strand, 1395671 - 1395611
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacata 233  Q
    |||||||||||||||| ||| ||||||||||||  |||||||| | ||||||||||||||||    
T  1395671 agcttatatgaaaataatttgactttattttatcttttgttat-agaaatagcttatacata 1395611  T

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Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 126
Target Start/End: Original strand, 14548681 - 14548726
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttatgacat 126  Q
    |||||| ||||| |||||||||||||||||||| ||| ||||||||    
T  14548681 acttgtgagactgtttgagagagcttatgaaaacaacgtatgacat 14548726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 276
Target Start/End: Original strand, 33965564 - 33965665
Alignment:
Q  176 ttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtatcaacacttaatt 274  Q
    ||||||||||| ||||| |||||||||||  ||| ||||||||||||| ||| |||| |||||| ||||  ||||| | ||||| ||| | | |||||||    
T  33965564 ttatatgaaaacagtttgactttattttaccttttgttataaaaaataacttgtacaaaaacacctatacaatacgtgtttatgctataagcgcttaatt 33965663  T
Q  275 aa 276  Q
    ||    
T  33965664 aa 33965665  T

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Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 2304224 - 2304280
Alignment:
Q  74 cataaatacttgtaagactatttgagagagcttatgaaaataacttatgacatgttc 130  Q
    |||||| |||||| | |||||||||||||  ||||||||  ||||||||||||||||    
T  2304224 cataaacacttgtgaaactatttgagagaaattatgaaagcaacttatgacatgttc 2304280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 9279417 - 9279481
Alignment:
Q  194 actttattttatgtttgttataaaaaatagcttatacataaacacttatatgatacgcgcttatg 258  Q
    |||||||| ||| ||| ||  |||||||| ||||||||||||  ||||||||||| |||||||||    
T  9279417 actttattgtatcttttttcgaaaaaataacttatacataaatgcttatatgataagcgcttatg 9279481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 37689454 - 37689509
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttat 228  Q
    |||||||||||||||| |||||||||| |||||  |||||||| |||||||||||||    
T  37689454 agcttatatgaaaataatttaactttactttatcttttgttat-aaaaatagcttat 37689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 41028921 - 41028996
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||| |||||| || || |||||||||| | ||| |||||| ||| |||||||||||||| |||||||||||||    
T  41028921 agcttatttgaaaacagattgactttattttttcttttgttatagaaa-tagcttatacataagcacttatatgata 41028996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 232
Target Start/End: Complemental strand, 42809305 - 42809242
Alignment:
Q  169 aaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacat 232  Q
    |||||||||||||||||| | ||||||| ||||||||  |||||||| | |||||||||||||||    
T  42809305 aaacagcttatatgaaaacaatttaactatattttatcttttgttat-agaaatagcttatacat 42809242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 43116498 - 43116573
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgata 248  Q
    ||||||||||||||| |||| | || ||||||| ||| |||||| ||| ||||||| |||||||||||| |||||||    
T  43116498 agcttatatgaaaattgtttgatttgattttatcttttgttatagaaa-tagcttacacataaacacttgtatgata 43116573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 262
Target Start/End: Original strand, 44284134 - 44284217
Alignment:
Q  179 tatgaaaatagtttaactttattttatgttt-gttataaaaaatagcttatacataaacacttatatgatacgcgcttatggtat 262  Q
    |||||||| ||||| ||||| |||||| ||| |||||| ||| |||||||||||| |  ||||||||||||  ||||||||||||    
T  44284134 tatgaaaacagtttgactttgttttattttttgttatagaaa-tagcttatacattagtacttatatgataatcgcttatggtat 44284217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 121
Target Start/End: Complemental strand, 50211845 - 50211805
Alignment:
Q  81 acttgtaagactatttgagagagcttatgaaaataacttat 121  Q
    |||||||||||| ||||||||| |||||||||| |||||||    
T  50211845 acttgtaagactgtttgagagaacttatgaaaacaacttat 50211805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0153 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 6568 - 6600
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||||||| ||||||||||||    
T  6568 agcttatatgaaaatagtttgactttattttat 6600  T

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Target: scaffold0153; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 205
Target Start/End: Original strand, 13588 - 13620
Alignment:
Q  173 agcttatatgaaaatagtttaactttattttat 205  Q
    |||||||||||||||||||| ||||||||||||    
T  13588 agcttatatgaaaatagtttgactttattttat 13620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 234
Target Start/End: Original strand, 21334 - 21409
Alignment:
Q  159 tagcttatagaaacagcttatatgaaaatagtttaactttattttat-gtttgttataaaaaatagcttatacataa 234  Q
    ||||||||  |||||||||||| ||||| | ||||||||||||||||  |||  ||| |||||||||||||||||||    
T  21334 tagcttatgaaaacagcttatacgaaaacaatttaactttattttatcttttcctat-aaaaatagcttatacataa 21409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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