View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_20 (Length: 342)
Name: NF18238_low_20
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_20 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 141 - 342
Target Start/End: Complemental strand, 29661171 - 29660970
Alignment:
| Q |
141 |
aggaaatataaggacttcagttgatacacattatcttgtagtcttaaagagtccctaggctttacccaagagtcaagactacaaaagaactgatatacga |
240 |
Q |
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| T |
29661171 |
aggaaatataaggacttcagttgatacacattatcttgtagtcttaaagagtccctaggctttacccaagagtcaagactacaaaagaactgatatacga |
29661072 |
T |
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| Q |
241 |
agaatgctgttacaactcatttaagagataagaaaccagcaaagagtctcaaagtggatcacaaatcgaaggacattatgtgtggtcaatgaatttatag |
340 |
Q |
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| T |
29661071 |
agaatgttgttacaactcatttaagagataagaaaccagcaaagagtctcaaagtggatcacaaatcgaaggacattatgtgtggtcaatgaatttatag |
29660972 |
T |
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| Q |
341 |
at |
342 |
Q |
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| T |
29660971 |
at |
29660970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 29661274 - 29661188
Alignment:
| Q |
18 |
caacattattttcactgttttagatctccgcctatccttttcactgtgcatctcttgtgttctgctaaatagcatatattatcctac |
104 |
Q |
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| T |
29661274 |
caacattattttcactgttttagatctccgcctatccttttcactgtgcatctcttgtgttctgccaaatagcatatattatcctac |
29661188 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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