View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_24 (Length: 286)
Name: NF18238_low_24
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 7 - 283
Target Start/End: Original strand, 51268403 - 51268679
Alignment:
| Q |
7 |
gatcagttcgctgcccaagaccttcctatatataagtgcatcattcattcatactcattctactcacaaagaaaattctacttctattttcctcttacat |
106 |
Q |
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| T |
51268403 |
gatcagttcgctgcccaagaccttcctatatataagtgcatcattcattcatactcattctactcactaagaaaattctacttctattttcctcttacat |
51268502 |
T |
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| Q |
107 |
atcttggctcttgtttctccaatcaatagtaacttcatttccatggctttcacagcctcgccaactataataagataccccatttcaaagcaaaatatgg |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
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| T |
51268503 |
atcttggctcttgtttctccaatcaatagtaacttcatttccatggctttcacagcctcgccagctataataagaaaccccatttcaaagcaaaatatgg |
51268602 |
T |
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| Q |
207 |
ttgtttgtgacatgcttgataacacttgtaggaacaagttttcatttcgaaacaagggcatctataaaggccaacat |
283 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
51268603 |
ttgtttgtgacatgcttgataacacttgtaggaaaaagttttcatttcgaaacaagggcatctataaaggccaacat |
51268679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 281
Target Start/End: Original strand, 23306449 - 23306719
Alignment:
| Q |
7 |
gatcagttcgctgcccaagaccttcctatatataagtgcatcattcattcatactcattctactcacaaagaaaattctacttctattttcctcttacat |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| | |||| |
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| T |
23306449 |
gatcagttcgctgcccaagaccttcctatatataagtgcatcat----tcatactcattctactcactaagaaaattttacttctattttcctataacat |
23306544 |
T |
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| Q |
107 |
atcttggctcttgtttctccaatcaatagtaacttcatttccatggctttcacagcctcgccaactataataagataccccatttcaaagcaaaatatgg |
206 |
Q |
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|| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| || |||||||| |||||||||| ||||||||| ||| |
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| T |
23306545 |
atttaggctcttgtttctccaatcaatagtaatttcatttccatggctttcacagcctcaccagctctaataagaaaccccatttcgaagcaaaatgtgg |
23306644 |
T |
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| Q |
207 |
ttgtttgtgacatgcttgataacacttgtaggaacaagttttcatttcgaaacaagggcatctataaaggccaac |
281 |
Q |
| |
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|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23306645 |
ttgtttgtgatatgcttgataacacttgtagggacaagttttcatttcgaaacaagggcatctataaaggccaac |
23306719 |
T |
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