View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_25 (Length: 271)
Name: NF18238_low_25
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_25 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 13 - 271
Target Start/End: Complemental strand, 33081141 - 33080885
Alignment:
| Q |
13 |
aatattgatgtggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaatt |
112 |
Q |
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| T |
33081141 |
aatattgatgtggtaaatagaacctttgcaccatgcttagaacatttttgcatgaaatttggttagaatttaagccaataatgggtgtcaaggaaaaatt |
33081042 |
T |
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| Q |
113 |
atcannnnnnnnnctcacacaaaagatgttgttccctctatatcctccacttgaattgttaatgttaatttagctttcaattaatcagttattttgtaaa |
212 |
Q |
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| T |
33081041 |
atcattttattttctcacacaaaagatgttgttccctctatatcctccacttg--ttgttaatgttaatttagctttcaattaatcagttattttgtaaa |
33080944 |
T |
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| Q |
213 |
aacaaaataaattacctaaagtagtttgaatttagtttgattgtattttatattatcaa |
271 |
Q |
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| T |
33080943 |
aacaaaataaattacctaaagtagtttgaatttagtttgattgtattttatattatcaa |
33080885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 33084991 - 33084827
Alignment:
| Q |
127 |
tcacacaaaagatgttgttccctctatatcctccacttg-----aattgttaatgttaatt----tagctttcaattaatca----gttattttgtaaaa |
213 |
Q |
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||||||||||||||||||| |||| ||||||||||||| || |||||||||||||| ||||| ||||||||| | |||||||| |||| |
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| T |
33084991 |
tcacacaaaagatgttgtttcctccctatcctccacttgttgttaaatgttaatgttaattaatttagctatcaattaattaattagttatttttcaaaa |
33084892 |
T |
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| Q |
214 |
acaaaataaattacctaaagtagtttgaat-------ttagtttgattgtattttatattatcaa |
271 |
Q |
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| T |
33084891 |
acaaaataaattacctaaagtagtttgaataattcaattagtttgattgtattttatattatcaa |
33084827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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