View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18238_low_26 (Length: 258)

Name: NF18238_low_26
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18238_low_26
NF18238_low_26
[»] chr6 (5 HSPs)
chr6 (1-258)||(5655428-5655685)
chr6 (24-102)||(2514645-2514722)
chr6 (31-103)||(2027455-2027526)
chr6 (20-75)||(2027880-2027935)
chr6 (24-69)||(781328-781373)
[»] chr5 (2 HSPs)
chr5 (26-103)||(35960359-35960434)
chr5 (24-77)||(37063149-37063201)
[»] chr7 (4 HSPs)
chr7 (25-102)||(17989073-17989149)
chr7 (24-104)||(2727408-2727487)
chr7 (24-103)||(1417207-1417285)
chr7 (38-102)||(9527140-9527203)
[»] chr4 (5 HSPs)
chr4 (29-103)||(4071830-4071903)
chr4 (24-60)||(30770826-30770862)
chr4 (26-64)||(10192229-10192267)
chr4 (24-65)||(21193941-21193982)
chr4 (24-64)||(40865753-40865793)
[»] chr3 (3 HSPs)
chr3 (20-102)||(23530234-23530316)
chr3 (24-64)||(1816525-1816566)
chr3 (32-64)||(48397597-48397629)
[»] chr8 (8 HSPs)
chr8 (24-64)||(31315540-31315580)
chr8 (24-64)||(1470943-1470983)
chr8 (24-64)||(14482145-14482185)
chr8 (24-72)||(25881549-25881597)
chr8 (31-103)||(27728070-27728141)
chr8 (24-64)||(36643958-36643998)
chr8 (24-64)||(39392748-39392788)
chr8 (24-76)||(41871938-41871990)
[»] chr1 (2 HSPs)
chr1 (24-103)||(17420146-17420224)
chr1 (25-100)||(21516317-21516391)
[»] scaffold0085 (1 HSPs)
scaffold0085 (36-86)||(34063-34112)
[»] chr2 (1 HSPs)
chr2 (24-64)||(37033987-37034027)


Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 5655428 - 5655685
Alignment:
Q  1 gagaaagtaagtgattacgttacgtataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  5655428 gagaaagtaagtgattacgttacgtataaactatttttataataaaagatacaataaagtcaaaataattttcatattaactataatttgttatcataag 5655527  T
Q  101 ctaacaataattcatggacatgtcataaactgcttttacaagtgcgtctaaacatcctcacaaatactttcgtcaatagataaacccaaataagtcattt 200  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5655528 ctaacaataattcatggacatgtcataaattgcttttacaagtgcgtctaaacatcctcacaaatactttcgtcaatagataaacctaaataagtcattt 5655627  T
Q  201 taggtannnnnnncaacatctcttgaaaatttcactcaagaaaagtgttataaactac 258  Q
    ||||||       |||||||||||||||||||||||||||||||||||||||||||||    
T  5655628 taggtatttttttcaacatctcttgaaaatttcactcaagaaaagtgttataaactac 5655685  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 2514645 - 2514722
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagct 102  Q
    |||||| |||||| |||||||||||||| |||||||||||| ||||||| |||| | |||||| || || |||||||||    
T  2514645 gtataagctatttctataataaaagataaaataaagtcaaactaatttt-atatgagctataagttattttcataagct 2514722  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 2027526 - 2027455
Alignment:
Q  31 ctatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagcta 103  Q
    |||||||||||| |||||||| |||||||||||| | |||||||||| | ||||||  |||| ||||||||||    
T  2027526 ctatttttataacaaaagataaaataaagtcaaact-attttcatataacctataagctgttctcataagcta 2027455  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 2027935 - 2027880
Alignment:
Q  20 ttacgtataaactatttttataataaaagatacaataaagtcaaaataattttcat 75  Q
    |||||||||| |||||||| || ||||||||| ||||||||||||||  |||||||    
T  2027935 ttacgtataagctatttttgtattaaaagataaaataaagtcaaaattgttttcat 2027880  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 781328 - 781373
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataat 69  Q
    |||||| |||||| |||||||||||||| |||||||| ||||||||    
T  781328 gtataagctatttctataataaaagataaaataaagtaaaaataat 781373  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 103
Target Start/End: Original strand, 35960359 - 35960434
Alignment:
Q  26 ataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagcta 103  Q
    ||||||||||| |||||||||||||| |||||||||||| ||  |||||||| |||||||| ||| | ||||||||||    
T  35960359 ataaactatttctataataaaagataaaataaagtcaaacta--tttcatataaactataagttgatttcataagcta 35960434  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 37063201 - 37063149
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataattttcatat 77  Q
    ||||||||||||| ||||| |||||||| |||||||||||| | ||||||||||    
T  37063201 gtataaactatttctataacaaaagataaaataaagtcaaact-attttcatat 37063149  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 17989149 - 17989073
Alignment:
Q  25 tataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagct 102  Q
    ||||||||| |||||||| |||| ||| |||||||||||| |  ||||||||| |||||||||||||| |||||||||    
T  17989149 tataaactagttttataacaaaatataaaataaagtcaaactg-ttttcatataaactataatttgttttcataagct 17989073  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 104
Target Start/End: Complemental strand, 2727487 - 2727408
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagctaa 104  Q
    ||||| ||||||| ||||| |||||||| ||||||| |||| |  |||||||||||||||||| ||||| | |||||||||    
T  2727487 gtatagactatttctataacaaaagataaaataaaggcaaactc-ttttcatatcaactataaattgtttttataagctaa 2727408  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 1417207 - 1417285
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagcta 103  Q
    ||||||||||||| ||||| |||||||| ||||||||| ||||  ||||||||| | | |||| ||||| ||||||||||    
T  1417207 gtataaactatttatataacaaaagataaaataaagtc-aaattgttttcatataagcaataagttgttttcataagcta 1417285  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 9527203 - 9527140
Alignment:
Q  38 tataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagct 102  Q
    ||||| |||||||| |||||||||||| |  ||||||||| |||||||| ||||| |||||||||    
T  9527203 tataacaaaagatataataaagtcaaact-gttttcatataaactataagttgttttcataagct 9527140  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 4071830 - 4071903
Alignment:
Q  29 aactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagcta 103  Q
    |||||||| ||||| |||||||| ||||||||| |||| |||||||||| | |||||| ||||||| ||||||||    
T  4071830 aactatttctataacaaaagataaaataaagtc-aaattattttcatataagctataagttgttatgataagcta 4071903  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 60
Target Start/End: Original strand, 30770826 - 30770862
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagt 60  Q
    |||||||||||||||||||||||||||| ||||||||    
T  30770826 gtataaactatttttataataaaagataaaataaagt 30770862  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 10192229 - 10192267
Alignment:
Q  26 ataaactatttttataataaaagatacaataaagtcaaa 64  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  10192229 ataaactatttttataacaaaagatagaataaagtcaaa 10192267  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 65
Target Start/End: Original strand, 21193941 - 21193982
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaa 65  Q
    |||||| ||||||||||| ||||||||| |||||||||||||    
T  21193941 gtataagctatttttatagtaaaagataaaataaagtcaaaa 21193982  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 40865753 - 40865793
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    ||||||||||||||| ||| |||||||| ||||||||||||    
T  40865753 gtataaactatttttctaacaaaagatagaataaagtcaaa 40865793  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 102
Target Start/End: Complemental strand, 23530316 - 23530234
Alignment:
Q  20 ttacgtataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagct 102  Q
    ||||||| || ||| |||| ||| |||||||| |||||||||||| || ||||||||| || ||||| ||||| |||||||||    
T  23530316 ttacgtagaagctagttttctaacaaaagataaaataaagtcaaattatttttcatataaagtataagttgttttcataagct 23530234  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 1816525 - 1816566
Alignment:
Q  24 gtataaactatttt-tataataaaagatacaataaagtcaaa 64  Q
    |||||||||||||| |||||||||||||| ||||||||||||    
T  1816525 gtataaactattttttataataaaagataaaataaagtcaaa 1816566  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 32 - 64
Target Start/End: Original strand, 48397597 - 48397629
Alignment:
Q  32 tatttttataataaaagatacaataaagtcaaa 64  Q
    |||||||||||||||||||| ||||||||||||    
T  48397597 tatttttataataaaagataaaataaagtcaaa 48397629  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 31315580 - 31315540
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    |||||| ||||||||||||||||||||| ||||||||||||    
T  31315580 gtataagctatttttataataaaagataaaataaagtcaaa 31315540  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 1470983 - 1470943
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    |||||| |||||| |||||||||||||| ||||||||||||    
T  1470983 gtataagctatttctataataaaagataaaataaagtcaaa 1470943  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 14482145 - 14482185
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  14482145 gtataaactatttctataacaaaagataaaataaagtcaaa 14482185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 25881597 - 25881549
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataatttt 72  Q
    ||||||||||||||||||  |||| ||| |||||||||||| |||||||    
T  25881597 gtataaactatttttatagcaaaacataaaataaagtcaaactaatttt 25881549  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 103
Target Start/End: Complemental strand, 27728141 - 27728070
Alignment:
Q  31 ctatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagcta 103  Q
    |||||| ||||| |||||||| |||||||||||| | |||||||||| || ||| | ||||| ||||||||||    
T  27728141 ctatttctataaaaaaagataaaataaagtcaaact-attttcatataaagtattagttgttttcataagcta 27728070  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 36643998 - 36643958
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    |||||| |||||| |||||||||||||||| ||||||||||    
T  36643998 gtataagctatttctataataaaagatacagtaaagtcaaa 36643958  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Complemental strand, 39392788 - 39392748
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  39392788 gtataaactatttctataacaaaagataaaataaagtcaaa 39392748  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 41871938 - 41871990
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataattttcata 76  Q
    |||||||||||||| |||| |||||||| |||||||||| ||  |||||||||    
T  41871938 gtataaactattttaataacaaaagataaaataaagtcagaacgattttcata 41871990  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 103
Target Start/End: Original strand, 17420146 - 17420224
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataagcta 103  Q
    ||||||||||||||||||| |||||||| |||||||||  || ||||||||||| | ||||||  |||| || |||||||    
T  17420146 gtataaactatttttataagaaaagataaaataaagtc-gaacaattttcatataagctataaactgttttcgtaagcta 17420224  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 100
Target Start/End: Original strand, 21516317 - 21516391
Alignment:
Q  25 tataaactatttttataataaaagatacaataaagtcaaaataattttcatatcaactataatttgttatcataag 100  Q
    |||||||||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||||| || || || |||||||    
T  21516317 tataaactatttttataagaaaagataaaatgaagtc-aaatagttttcatataaactagaagttattttcataag 21516391  T

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Target: scaffold0085 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 86
Target Start/End: Complemental strand, 34112 - 34063
Alignment:
Q  36 tttataataaaagatacaataaagtcaaaataattttcatatcaactataa 86  Q
    |||||||||||||||| ||||||||| |||| |||||||||| ||||||||    
T  34112 tttataataaaagataaaataaagtc-aaattattttcatatgaactataa 34063  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 37033987 - 37034027
Alignment:
Q  24 gtataaactatttttataataaaagatacaataaagtcaaa 64  Q
    ||||||||||||| ||||| |||||||| ||||||||||||    
T  37033987 gtataaactatttctataaaaaaagataaaataaagtcaaa 37034027  T

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