View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_30 (Length: 239)
Name: NF18238_low_30
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 43808260 - 43808040
Alignment:
| Q |
1 |
cctgtagtgttgccaatatcctccaaatcaaagtacacactcttgtcaccatactttgctactacagagccactcctgcatattaattatgttatgttaa |
100 |
Q |
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| T |
43808260 |
cctgtagtgttgccaatatcctccaaatcaaagtacacactcttgtcaccatactttgctactacagagccactcctgcatattaattatgttatgttaa |
43808161 |
T |
|
| Q |
101 |
gctttcacatacaattattataacccaaataaagcaatatttatatttatctggcttctacaaaacatagacatacaatatgagtttatttaatatcttg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
43808160 |
gctttcacatacaattattataacccaaataaagcaatatttatatttatctggcttctacaaaacatagacataaaatatgagtttatttaatatcttg |
43808061 |
T |
|
| Q |
201 |
aaagttgtgaaagtaccttaa |
221 |
Q |
| |
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||||||||||||||||||||| |
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| T |
43808060 |
aaagttgtgaaagtaccttaa |
43808040 |
T |
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