View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_32 (Length: 237)
Name: NF18238_low_32
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_32 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5655738 - 5655954
Alignment:
| Q |
1 |
tgcttatgcattgaaaagtgttatggactattgttatatttaacttgttacttgctttagcagagcagttaccgtgagtacttgaagctgaaagcaagat |
100 |
Q |
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| T |
5655738 |
tgcttatgcattgaaaagtgttatggactattgttatatttaacttgttacttgctttagcagagcagttaccgtgagtacttgaagctgaaagcaagat |
5655837 |
T |
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| Q |
101 |
ttgaatctcttcaaaggactcaaaggtaaatatattaacatgtgtgagtttaaatgttcaaactatataatatatatgtttttgaagtgtttcattaaga |
200 |
Q |
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| T |
5655838 |
ttgaatctcttcaaaggactcaaaggtaaatatattaacatgtgtgagtgtaaatgttcaaact-----atatatatgtttttgaagtgtttcattaaga |
5655932 |
T |
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| Q |
201 |
ccatggcattttgttccttaat |
222 |
Q |
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| T |
5655933 |
ccatggcattttgttccttaat |
5655954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 5232068 - 5232125
Alignment:
| Q |
59 |
agcagagcagttaccgtgagtacttgaagctgaaagcaagatttgaatctcttcaaag |
116 |
Q |
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| T |
5232068 |
agcagagcagttaccgtgaatacttgaagctgaaacaaagatttgaaaatcttcaaag |
5232125 |
T |
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