View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_4 (Length: 630)
Name: NF18238_low_4
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 54714007 - 54713732
Alignment:
| Q |
18 |
agttgcatgatagaaagactggctaaaaagtgaaacttttgaagagcgaatgattctgcatttgtcttcacttttgaagagccaatgaagacttgctaac |
117 |
Q |
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| T |
54714007 |
agttgcatgatagaaagactggctaaaaaatgaaacttttgaagagcgaatgattctgcatttgtcttcacttttgaagagccaatgaagacttgctaac |
54713908 |
T |
|
| Q |
118 |
aaatacaaaattagttacaacatcaatgaagaattcaaatatagaacgttacggcaattgtttgggttcatcgttatattaaatttattccattaatact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
54713907 |
aaatacaaaattagttacaacatcaatgaagaattccaatatagaacgttacggcaattgtttgcgttcatcgttatattaaatttattccattaatact |
54713808 |
T |
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| Q |
218 |
aatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
293 |
Q |
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| T |
54713807 |
aatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
54713732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 358 - 622
Target Start/End: Complemental strand, 54713461 - 54713192
Alignment:
| Q |
358 |
atttttcgagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaa |
456 |
Q |
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| T |
54713461 |
attttttgagtgattatacatgaac---caccctatgtggctaccactctttgtacaccttccacgtgtctaaaaaaaaatataaaataatcttatgaaa |
54713365 |
T |
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| Q |
457 |
-gtgccatctcataaaagaagacnnnnnnnn------ttaagtcccaaccctcagcttctctaaaaacggatctcttctctctccccaccaccatccatt |
549 |
Q |
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| T |
54713364 |
agtgccatctcataaaagaagacaaaaaaaaaaaaaattaagtcccaaccctcatcttctctaaaaacggatctcttctctctccccaccaccatacatt |
54713265 |
T |
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| Q |
550 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctc |
622 |
Q |
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| T |
54713264 |
gccatcgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctc |
54713192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 54680242 - 54680135
Alignment:
| Q |
89 |
ttttgaagagccaatgaagacttgctaacaaatacaaaattagttacaacatcaatgaagaattcaaatatagaacgttacggcaattgtttgggttcat |
188 |
Q |
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| T |
54680242 |
ttttgaagagccaatgaagaccggctaacaaatacaaaatcagttacaacatcaacgtagaattccaatatagaactttacggcaattgtttgggttcat |
54680143 |
T |
|
| Q |
189 |
cgttatat |
196 |
Q |
| |
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|||||||| |
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| T |
54680142 |
cgttatat |
54680135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 196 - 293
Target Start/End: Complemental strand, 54679973 - 54679876
Alignment:
| Q |
196 |
ttaaatttattccattaatactaatatgctagatgaatggtcaattttactatgttggagtcaacatctgatgtgttaaatcatatctaccaatcaaa |
293 |
Q |
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||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
54679973 |
ttaaatttattacattaatactacaatgctagatgaagggtcaattttactatgttgtactcaacatctgatgtgttaaatcatatctaccaatcaaa |
54679876 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 320 - 362
Target Start/End: Complemental strand, 54713517 - 54713475
Alignment:
| Q |
320 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
362 |
Q |
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| T |
54713517 |
tcaaaagggttgaaatctagtttataaatattgcaacaatttt |
54713475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 314 - 362
Target Start/End: Complemental strand, 54679886 - 54679839
Alignment:
| Q |
314 |
taccaatcaaaagggttgaaatctagtttataaatattgcaacaatttt |
362 |
Q |
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|||||||||||||| ||||||||||||||||||| ||||||| |||||| |
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| T |
54679886 |
taccaatcaaaagg-ttgaaatctagtttataaaaattgcaataatttt |
54679839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 365 - 620
Target Start/End: Original strand, 32971718 - 32971971
Alignment:
| Q |
365 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaatatataaaataatcttatgaaagtgccatc |
464 |
Q |
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|||||||||||||||||| || | ||| |||||||||||||||||||||||| ||||||||||| ||| ||||||| ||||||||||||||||||| | |
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| T |
32971718 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacacctttcacatgtctaagaaaaatataaa-taatcttatgaaagtgccagc |
32971813 |
T |
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| Q |
465 |
tcataaaagaagacnnnnnnnn-ttaagtcccaaccctcagcttctctaaaaacggatctc--ttctctctccccaccaccatccattgccatcgccgca |
561 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||| |||||| ||||||||||| ||| ||||||| ||||| ||||||| |
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| T |
32971814 |
tcataaaagaagacaaaaaaaaattaagtcccaaccctt-gcttctctaaaaacagatctctcttctctctcccaaccgccatccactgccaccgccgca |
32971912 |
T |
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| Q |
562 |
aactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttc |
620 |
Q |
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||||||||||| || | || |||| |||||||||||||||||||||||||||||||||| |
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| T |
32971913 |
aactccgaccacccctccgccccaactccgatttcaacaactcaactctctctttcttc |
32971971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 365 - 622
Target Start/End: Complemental strand, 41665254 - 41664990
Alignment:
| Q |
365 |
gagtggttatacatgaacaaccaccttatatggctaccactctttgtacaccttccacatgtctaaaaaata-tataaaataatcttatgaaagtgccat |
463 |
Q |
| |
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|||||||||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| || |
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| T |
41665254 |
gagtggttatacatgaac---catcctatgtggctaccactctttgtacaccttccacatgtctaaaaaaaaatataaaataatcttatgaaagtgtcag |
41665158 |
T |
|
| Q |
464 |
ctcataaaagaagacnnnnnnnn--------ttaagtcccaaccctcagcttctctaaaaacggatctct-tctctctccccaccaccatccattgccat |
554 |
Q |
| |
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||||||||||||||| |||||||| ||||||| |||||||||||||| ||||||| | |||||||||||| ||||||| ||||| |
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| T |
41665157 |
ctcataaaagaagacaaaaaaaaataaaaaattaagtcctaaccctccgcttctctaaaaacagatctctctttctctccccaccgccatccactgccac |
41665058 |
T |
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| Q |
555 |
cgccgcaaactccgaccatcctttcgtcccagctccgatttcaacaactcaactctctctttcttctc |
622 |
Q |
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||||||||||||||||| || | || ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41665057 |
tgccgcaaactccgaccacccctccgccccagctccgatttcaacaactcaactctctctttcttctc |
41664990 |
T |
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