View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18238_low_5 (Length: 589)
Name: NF18238_low_5
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 32226214 - 32226642
Alignment:
| Q |
1 |
acattaaattagttaataccataaatggccttgacaaatttcattctgtttttaggaaatcgatcataggaggttgagattccttttccaaaaggagttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226214 |
acattaaattagttaataccataaatggccttgaaaattttcattctgtttttaggaaatcgatcataggaggttgagattccttttccaaaaggagttg |
32226313 |
T |
|
| Q |
101 |
aagaacagtgatgttagctcccttaggagaatggtgttgcctaaggtttggcctttgcttatagacttaatttctctgtagcaatatctgtaaaatagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
32226314 |
aagaacagtgatgttagctcccttaggagaatggtgttgcctaaggtttggcctttgcttatagacttaatttctcagtagcaatatctgtaaaatagtt |
32226413 |
T |
|
| Q |
201 |
tcaattaactacattttaaaaccatcataaccttataatataataaatttattataacttgcagaaagcagcagaggctttccttcctgtccttgagtcg |
300 |
Q |
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| T |
32226414 |
tcaattaactacattttaaaaccatcataaccttataatataataaatttattataacttgcagaaagcagcagaggctttccttcctgtccttgagtcg |
32226513 |
T |
|
| Q |
301 |
aaggaaggaattcttctcagcatggatgatttagatggtcttcatgtatggagtttcaagtacaggtctgctatgttcatacattgttggttaattgtca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32226514 |
aaggaaggaattcttctcagcatggatgatttagatggtcttcatgtatggagtttcaagtacaggtctgctatgttcatacattgttggttaattgtca |
32226613 |
T |
|
| Q |
401 |
tagccacaaaataagaacagaatgaaatt |
429 |
Q |
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| T |
32226614 |
tagccacaaaataagatcagaatgaaatt |
32226642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 453 - 572
Target Start/End: Original strand, 32226689 - 32226808
Alignment:
| Q |
453 |
gtcgcagatcttagccgttagataaagaatggttcactcatttgaaattgtattttaaagtcgatttgggtaaattcataatacggttatattcaataat |
552 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||| |
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| T |
32226689 |
gtcgcagatcttagccgttagataaagaatggttcactcatttgaaattgtattttaaagtcgatttgggtaaactcataataaggttatattgaataat |
32226788 |
T |
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| Q |
553 |
gcaggttttggcctaacaat |
572 |
Q |
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|||||||||||||||||||| |
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| T |
32226789 |
gcaggttttggcctaacaat |
32226808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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