View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18238_low_6 (Length: 572)
Name: NF18238_low_6
Description: NF18238
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18238_low_6 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 427; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 13 - 455
Target Start/End: Complemental strand, 24218604 - 24218162
Alignment:
| Q |
13 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
24218604 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattcttgaggcaagatgtt |
24218505 |
T |
|
| Q |
113 |
ggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgat |
212 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
24218504 |
ggcacggggccacggaaattattaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgattccaccatgaagatgat |
24218405 |
T |
|
| Q |
213 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttg |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24218404 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttg |
24218305 |
T |
|
| Q |
313 |
tgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatg |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24218304 |
tgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatg |
24218205 |
T |
|
| Q |
413 |
cttccatagaggttgttcatttgcatatccaatacagaaagat |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24218204 |
cttccatagaggttgttcatttgcatatccaatacagaaagat |
24218162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 73 - 448
Target Start/End: Complemental strand, 16843809 - 16843434
Alignment:
| Q |
73 |
cacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgat |
172 |
Q |
| |
|
|||||| |||||||||||||| || | || ||| |||||||||| || ||||| |||||||| ||||||||| ||||||||| ||| ||||||| |
|
|
| T |
16843809 |
cacattcatcattccttgaaagttctggatgcatgatgttggcaaggtgccactaaaattgttgttagagacatcaaaaattctcaacttaggaaatgga |
16843710 |
T |
|
| Q |
173 |
tgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtat |
272 |
Q |
| |
|
|| ||||||||||||||||||||| | |||||||||| ||| ||||||||| |||||||||||||||||| ||| ||| | |||| |||||||||||| |
|
|
| T |
16843709 |
tgcttggtgctagaacaagtgattactccatgaagattattagatcgtaaaacgagtacctgtaactcttgtagagtttcaagccaactgggaaatgtat |
16843610 |
T |
|
| Q |
273 |
cgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttat |
372 |
Q |
| |
|
| | |||| ||||||| |||||||||||||||||||| | || ||||||| ||||||||||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
16843609 |
cctctatgttgttgtcaccaaggtccaaaacttcaagatatgaacagtgagacaaagactgtggtaatggtccttccaattggtttccattcaactttat |
16843510 |
T |
|
| Q |
373 |
agtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcatatccaataca |
448 |
Q |
| |
|
||||| ||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16843509 |
agtctgaaatgcatttcctttggaaaaggttttaggaatgcttccatagaggttgttcatttgcatatccaataca |
16843434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 13 - 448
Target Start/End: Complemental strand, 16846536 - 16846102
Alignment:
| Q |
13 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgtt |
112 |
Q |
| |
|
||||||||||||||| |||||| |||| |||||||| |||||||||| |||||| ||||| | || ||||||||||||||||| |||| || |||||| |
|
|
| T |
16846536 |
cacagaatcattatagtaattgacctttcccatgtactgcaaaccagttttattatcattcgcgttcatcattccttgaaaattcttgatacatgatgtt |
16846437 |
T |
|
| Q |
113 |
ggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgat |
212 |
Q |
| |
|
|||| || |||| ||| |||||| | ||| || ||||||||| || ||||||| || |||||||||||||| |||||| ||||| ||| | || |
|
|
| T |
16846436 |
ggcaacggtccactgaatttgttatcgaagatgtccaaaattctcaattt-ggaaatggatgcttggtgctagaacatgtgattgaaccataaagtttat |
16846338 |
T |
|
| Q |
213 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttg |
312 |
Q |
| |
|
|||| | |||||||||||| ||||||||||| ||| ||| | |||| ||||||||||||| | |||| ||||||| |||||||||||||||||||| | |
|
|
| T |
16846337 |
ttgaccttaaactgagtacatgtaactcttgtagagtttcaagccaactgggaaatgtatcctctatgttgttgtcaccaaggtccaaaacttcaagata |
16846238 |
T |
|
| Q |
313 |
tgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatg |
412 |
Q |
| |
|
|| |||| ||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| | || ||||||||| ||||| ||| |||| ||| |
|
|
| T |
16846237 |
tgaacagttagctaaagaccgtggtaatggtccttccaattggttgccattcaactttatagtgacaaacacatttcctttggaaaaggttctaggaatg |
16846138 |
T |
|
| Q |
413 |
cttccatagaggttgttcatttgcatatccaataca |
448 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16846137 |
cttccaaagaggttgttcatttgcatatccaataca |
16846102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 455 - 555
Target Start/End: Complemental strand, 24218095 - 24217995
Alignment:
| Q |
455 |
tcagggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtc |
554 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24218095 |
tcagggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtc |
24217996 |
T |
|
| Q |
555 |
t |
555 |
Q |
| |
|
| |
|
|
| T |
24217995 |
t |
24217995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 461 - 555
Target Start/End: Complemental strand, 16843219 - 16843125
Alignment:
| Q |
461 |
aacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtct |
555 |
Q |
| |
|
||||||||||||| | || ||| |||||||||||||||||||||||||||||| ||||||||||||| ||||| | |||||| |||| |||| |
|
|
| T |
16843219 |
aacttgcattgcagaatgttgaagaaatgtctcctgtgaagttgttgtttgagagcgaaaagtattgaaggccataagatggaattggaatgtct |
16843125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 16843358 - 16843264
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
|||| |||||||||||| | || ||| ||| ||||||||||||||||| |||||||||||||||||| ||| |||| |||||||| ||||| |
|
|
| T |
16843358 |
agggtacttgcattgcagaatgttgaagaaatatctcctgtgaagttgttatttgagagtgaaaagtatacaatgccatcaggtggaattggaag |
16843264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 26)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 13 - 454
Target Start/End: Complemental strand, 37383199 - 37382758
Alignment:
| Q |
13 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgtt |
112 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||| |||| ||| |||||| |
|
|
| T |
37383199 |
cacagaatcattatagtaattggacttacccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaaattcttgatgcacgatgtt |
37383100 |
T |
|
| Q |
113 |
ggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgat |
212 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||||| ||||||||| ||| ||||||| |||||||||||||| || |||||| | |||||||| | || |
|
|
| T |
37383099 |
ggcaagggcccaataaaattgttgttagagacatcaaaaattctcaacttgggaaatggatgtttggtgctagagcatgtgattgcgccatgaagtttat |
37383000 |
T |
|
| Q |
213 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttg |
312 |
Q |
| |
|
|||||| ||||||||| |||||||| ||||| ||| ||| | |||||||||||| ||||| | || | ||||||||||||||||||||||||| |||| |
|
|
| T |
37382999 |
ttgatcttaaactgagcacctgtaattcttgtagagtttcaagccaattgggaaaagtatcctctacgttgttgtctccaaggtccaaaacttcgagttt |
37382900 |
T |
|
| Q |
313 |
tgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatg |
412 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||| ||||||||||||| || || ||| |||| ||| |
|
|
| T |
37382899 |
tgtacagtgagccaaagactgtggtaatggtccttccaatcggtttccattcaactttattgtctcaaatgcatttcctttggagaaggttctaggaatg |
37382800 |
T |
|
| Q |
413 |
cttccatagaggttgttcatttgcatatccaatacagaaaga |
454 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
37382799 |
tgtccatagaggttgttcatttgcatatccaataccgaaaga |
37382758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 38 - 444
Target Start/End: Original strand, 37701995 - 37702401
Alignment:
| Q |
38 |
ttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaattgttac |
137 |
Q |
| |
|
|||| ||||||||||| | ||| ||| ||| |||| |||||||||||||||||||| || |||| ||| |||||||||| |||||||| |||||||| |
|
|
| T |
37701995 |
ttacgcatgtattgcagatcagtttttttgtcatttacattaatcattccttgaaagttcttgatgcatgatgttggcaaggggccactaaaattgttgt |
37702094 |
T |
|
| Q |
138 |
cagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaa |
237 |
Q |
| |
|
|||| |||| ||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
37702095 |
tagaggcatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagatgatttgatcgtaaactcagcacctgtaa |
37702194 |
T |
|
| Q |
238 |
ctcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggt |
337 |
Q |
| |
|
|||| | | | ||||| |||||||||||||||||| | |||| ||||||| ||||||||||| |||||||| | || || |||||||||||||| ||| |
|
|
| T |
37702195 |
ctctggtaaagtttctagccaattgggaaatgtatcctctatgttgttgtcaccaaggtccaatacttcaagatttgaacattgagccaaagactgcggt |
37702294 |
T |
|
| Q |
338 |
aatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgca |
437 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||| || || ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
37702295 |
aatggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgca |
37702394 |
T |
|
| Q |
438 |
tatccaa |
444 |
Q |
| |
|
||||||| |
|
|
| T |
37702395 |
tatccaa |
37702401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 40 - 454
Target Start/End: Original strand, 37639060 - 37639474
Alignment:
| Q |
40 |
acccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaattgttacca |
139 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |||||||||||||| || |||| ||| |||||||||| ||| |||| |||||||| | |
|
|
| T |
37639060 |
acccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
37639159 |
T |
|
| Q |
140 |
gagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaact |
239 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
37639160 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
37639259 |
T |
|
| Q |
240 |
cttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggtaa |
339 |
Q |
| |
|
|| | ||| ||||| ||||| ||||||||||| | | | ||||||| |||||||||||||||||||| | || |||| ||||||||| |||||||| |
|
|
| T |
37639260 |
ctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaa |
37639359 |
T |
|
| Q |
340 |
tggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcata |
439 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| || || ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
37639360 |
tggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggagaaggttctaggaatgcttccatagaggttgttcatttgcata |
37639459 |
T |
|
| Q |
440 |
tccaatacagaaaga |
454 |
Q |
| |
|
|||||||||| |||| |
|
|
| T |
37639460 |
tccaatacagtaaga |
37639474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 40 - 448
Target Start/End: Complemental strand, 37401844 - 37401436
Alignment:
| Q |
40 |
acccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaattgttacca |
139 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||||| |||||||||||||| || |||| ||| |||||||||| ||| |||| |||||||| | |
|
|
| T |
37401844 |
acccatgtattgcaaaccagtgttattgtcattcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
37401745 |
T |
|
| Q |
140 |
gagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaact |
239 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
37401744 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
37401645 |
T |
|
| Q |
240 |
cttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggtaa |
339 |
Q |
| |
|
|| | ||| ||||| ||||| ||||||||||| | | | ||||||| |||||||||||||||||||| | || |||| ||||||||| |||||||| |
|
|
| T |
37401644 |
ctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaa |
37401545 |
T |
|
| Q |
340 |
tggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcata |
439 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
37401544 |
tggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcata |
37401445 |
T |
|
| Q |
440 |
tccaataca |
448 |
Q |
| |
|
||||||||| |
|
|
| T |
37401444 |
tccaataca |
37401436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 37593492 - 37593926
Alignment:
| Q |
14 |
acagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttg |
113 |
Q |
| |
|
|||||||||||||| |||| || |||| |||||||||||||| || || |||||||||| |||||||||||||| || |||| ||| ||||||| |
|
|
| T |
37593492 |
acagaatcattatagtaataacccacacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37593591 |
T |
|
| Q |
114 |
gcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatt |
213 |
Q |
| |
|
||| ||| |||| |||||||| ||| ||||| ||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
37593592 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
37593691 |
T |
|
| Q |
214 |
tgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgt |
313 |
Q |
| |
|
||||||||| || || || ||||||||||| ||| ||||| |||||| |||||||| || | |||| ||||||| |||||||||||||||||||| | |
|
|
| T |
37593692 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
37593791 |
T |
|
| Q |
314 |
gtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgc |
413 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||| ||| |||| ||| |
|
|
| T |
37593792 |
gaacagtgagacaaagactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgt |
37593891 |
T |
|
| Q |
414 |
ttccatagaggttgttcatttgcatatccaataca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37593892 |
ttccatagaggttgttcatttgcatatccaataca |
37593926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 14 - 448
Target Start/End: Original strand, 37695883 - 37696317
Alignment:
| Q |
14 |
acagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttg |
113 |
Q |
| |
|
|||||||||||||| |||| | | |||| |||||||||||||| || || |||||||||| |||||||||||||| || |||| ||| ||||||| |
|
|
| T |
37695883 |
acagaatcattatagtaataaccgtcacccttgtattgcaaaccaatttggctgtcattcacattcatcattccttgaaagttcttgatgcatgatgttg |
37695982 |
T |
|
| Q |
114 |
gcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatt |
213 |
Q |
| |
|
||| ||| |||| |||||||| ||| ||||| ||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
37695983 |
gcaagggcccactaaaattgttgatagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattatt |
37696082 |
T |
|
| Q |
214 |
tgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgt |
313 |
Q |
| |
|
||||||||| || || || ||||||||||| ||| ||||| |||||| |||||||| || | |||| ||||||| |||||||||||||||||||| | |
|
|
| T |
37696083 |
tgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaat |
37696182 |
T |
|
| Q |
314 |
gtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgc |
413 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||| ||| |||| ||| |
|
|
| T |
37696183 |
gaacagtgagacaaagactgtggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatgt |
37696282 |
T |
|
| Q |
414 |
ttccatagaggttgttcatttgcatatccaataca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37696283 |
ttccatagaggttgttcatttgcatatccaataca |
37696317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 173; E-Value: 9e-93
Query Start/End: Original strand, 40 - 448
Target Start/End: Original strand, 37823218 - 37823626
Alignment:
| Q |
40 |
acccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaattgttacca |
139 |
Q |
| |
|
||||||||||||||||||| || | | || ||||||| |||||||||||||| || |||| ||| |||||||||| ||| |||| |||||||| | |
|
|
| T |
37823218 |
acccatgtattgcaaaccaatttggtcgtcactcacattcatcattccttgaaagttcttgatgcatgatgttggcaagggcccactaaaattgttgtta |
37823317 |
T |
|
| Q |
140 |
gagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaact |
239 |
Q |
| |
|
|||||||| ||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
37823318 |
gagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaact |
37823417 |
T |
|
| Q |
240 |
cttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggtaa |
339 |
Q |
| |
|
|| | ||| ||||| ||||| ||||||||||| | | | ||||||| |||||||||||||||||||| | || |||| ||||||||| |||||||| |
|
|
| T |
37823418 |
ctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggtaa |
37823517 |
T |
|
| Q |
340 |
tggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcata |
439 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
37823518 |
tggtccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgcata |
37823617 |
T |
|
| Q |
440 |
tccaataca |
448 |
Q |
| |
|
||||||||| |
|
|
| T |
37823618 |
tccaataca |
37823626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 33 - 444
Target Start/End: Complemental strand, 37393730 - 37393319
Alignment:
| Q |
33 |
tggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaatt |
132 |
Q |
| |
|
|||| ||||||||||||||||||||| || || |||||||| |||||||||||||| || |||| ||| |||||||||| |||||||| ||||| |
|
|
| T |
37393730 |
tggctttacccatgtattgcaaaccaatttggctgttattcacatccatcattccttgaaagttcttgaagcatgatgttggcaaggggccactaaaatt |
37393631 |
T |
|
| Q |
133 |
gttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacc |
232 |
Q |
| |
|
||||| ||||||||| |||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||||||||||||||||||||| || ||| |
|
|
| T |
37393630 |
gttactagagacatcataaattctcaacttaggaaatggatgcttggtgctagaacatgtgattgacccatgaagatgatttgatcgtaaacttagcacc |
37393531 |
T |
|
| Q |
233 |
tgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagact |
332 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||| ||||| | |||| ||||||| ||||||||||| |||||||| | || |||| ||||||| | | |
|
|
| T |
37393530 |
tgtaactcttgtagagtttctagccaattgggaaaagtatcctctatgttgttgtcaccaaggtccaatacttcaagatatgaacagtaagccaaacatt |
37393431 |
T |
|
| Q |
333 |
gtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcat |
432 |
Q |
| |
|
||||||||||||| ||||||||||| |||||||| ||||||||||| ||| |||||||| ||||| ||| ||| ||||||||| ||||||||||||| |
|
|
| T |
37393430 |
gtggtaatggtccttccaattggtttccattcaattttatagtctcaaatatatttcctttggaaaaggttccaggaatgcttccacagaggttgttcat |
37393331 |
T |
|
| Q |
433 |
ttgcatatccaa |
444 |
Q |
| |
|
|||||||||||| |
|
|
| T |
37393330 |
ttgcatatccaa |
37393319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 13 - 448
Target Start/End: Original strand, 37532387 - 37532822
Alignment:
| Q |
13 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgtt |
112 |
Q |
| |
|
||||||||||||||| |||| || |||| |||||||||||||| || || |||||||||| |||||||||| ||| || |||| ||| ||| || |
|
|
| T |
37532387 |
cacagaatcattatagtaataacccgcacccttgtattgcaaaccaatttggctgtcattcacattcatcattcctttaaagttcttgatgcatgatatt |
37532486 |
T |
|
| Q |
113 |
ggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgat |
212 |
Q |
| |
|
|||| ||| |||| |||||||| ||| ||||| ||||||||| ||| |||||||| || ||||||||||||||||||||| |||||||||||| || |
|
|
| T |
37532487 |
ggcaagggcccactaaaattgttgttagaaacatcaaaaattctcaacttaggaaatgaatgcttggtgctagaacaagtgattgcaccatgaagattat |
37532586 |
T |
|
| Q |
213 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttg |
312 |
Q |
| |
|
|||||||||| || || || ||||||||||| ||| ||||| |||||| |||||||| || | |||| ||||||| |||||||||||||||||||| |
|
|
| T |
37532587 |
ttgatcgtaagcttagaacttgtaactcttgtagagtttctagccaatttggaaatgtgtcctctatgttgttgtcaccaaggtccaaaacttcaagaaa |
37532686 |
T |
|
| Q |
313 |
tgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatg |
412 |
Q |
| |
|
|| ||||||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||||| ||||||||| ||| ||||| ||| |||| ||| |
|
|
| T |
37532687 |
tgaacagtgagacaaagactggggtaatggtccttccaattggtttccattcaactttatagtctgaaatgcattttctttggaaaaggttctaggaatg |
37532786 |
T |
|
| Q |
413 |
cttccatagaggttgttcatttgcatatccaataca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
37532787 |
tttccatagaggttgttcatttgcatatccaataca |
37532822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 13 - 454
Target Start/End: Original strand, 37434997 - 37435438
Alignment:
| Q |
13 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgtt |
112 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||||||| | | |||||||||| |||||||||||||| || |||| || |||||| |
|
|
| T |
37434997 |
cacagaatcattatagtaattgttcttacccatgtattgcaaaccaatctggctatcattcacattcatcattccttgaaagttcttgatacatgatgtt |
37435096 |
T |
|
| Q |
113 |
ggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgat |
212 |
Q |
| |
|
|||| || |||| ||||||||||| ||| || ||||||| | ||| | ||| | || |||||| ||||||| |||||| ||||| ||| | || |
|
|
| T |
37435097 |
ggcaaggatccactaaaattgttaccgaagatgtcaaaaattcttaacttagaaaaaggatggttggtgttagaacaggtgattgaaccattaagtttat |
37435196 |
T |
|
| Q |
213 |
ttgatcgtaaactgagtacctgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttg |
312 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||||| |||||||||||||||||| | |||| |||||| |||||||||||||| || |||| |
|
|
| T |
37435197 |
ttgatcttaaactgagtacctgtaactcttgtagagtttctagccaattgggaaatgtatcctctatgttgttgtatccaaggtccaaaattttgagttc |
37435296 |
T |
|
| Q |
313 |
tgtgcagtgagccaaagactgtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatg |
412 |
Q |
| |
|
||| |||||||||||||| || ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||| ||||| |||||||||||| |
|
|
| T |
37435297 |
tgtacagtgagccaaagattgaggtaatggtccttctaattggttgccattcaactttatagtctcgaaggcatttcctctggaaaaagttttaggcatg |
37435396 |
T |
|
| Q |
413 |
cttccatagaggttgttcatttgcatatccaatacagaaaga |
454 |
Q |
| |
|
||||||| ||||||||||||||||||||||| || |||||| |
|
|
| T |
37435397 |
cttccattaaggttgttcatttgcatatccaaaacggaaaga |
37435438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 38 - 444
Target Start/End: Original strand, 37710816 - 37711222
Alignment:
| Q |
38 |
ttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaattgttac |
137 |
Q |
| |
|
|||| ||||||||||| | || ||| ||| ||||||| || |||||||||||||| || |||| ||| |||| ||||| ||| |||| |||||||| |
|
|
| T |
37710816 |
ttacgcatgtattgcagatcaatttttttgtcattcaccttcatcattccttgaaagttcttgatgcatgatgctggcaagggcccactaaaattgttgt |
37710915 |
T |
|
| Q |
138 |
cagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaa |
237 |
Q |
| |
|
||||||||| ||||||||| ||| ||||||| || |||||||||||||| |||||| |||||||||||| ||||||||||||||| | |||||||| |
|
|
| T |
37710916 |
tagagacatcaaaaattctcaacttgggaaatgtatgcttggtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttatcacctgtaa |
37711015 |
T |
|
| Q |
238 |
ctcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggt |
337 |
Q |
| |
|
|||| | ||| ||||| ||||| ||||||||||| | | | ||||||| |||||||||||||||||||| | || |||| ||||||||| |||||| |
|
|
| T |
37711016 |
ctctggtagagtttctagccaatcaggaaatgtatcctcaacgttgttgtcaccaaggtccaaaacttcaagatatgaacagttagccaaagattgtggt |
37711115 |
T |
|
| Q |
338 |
aatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgca |
437 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||||||||| ||||||||||||| | ||| ||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
37711116 |
aatgatccttccaattggttgccattcaactttatagtctcaaatgcatttcctttggtaaaggttctaggaatgcttccatagaggttgttcatttgca |
37711215 |
T |
|
| Q |
438 |
tatccaa |
444 |
Q |
| |
|
||||||| |
|
|
| T |
37711216 |
tatccaa |
37711222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 152 - 454
Target Start/End: Complemental strand, 37413899 - 37413597
Alignment:
| Q |
152 |
attctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacctgtaactcttgcagaactt |
251 |
Q |
| |
|
||||||| ||| ||||||| || || ||||||||||| |||||| |||||||||||| ||||||||||||||| || |||||||||||||| ||| || |
|
|
| T |
37413899 |
attctcaacttgggaaatgtatgctttgtgctagaacaggtgattgcaccatgaagattatttgatcgtaaacttagcacctgtaactcttgtagagttt |
37413800 |
T |
|
| Q |
252 |
ctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagactgtggtaatggtccctccaa |
351 |
Q |
| |
|
||| |||||||||||||||||| | ||| ||||||| |||||||||| ||||||||| | | |||| | |||||||||||||||||||||||| ||||| |
|
|
| T |
37413799 |
ctagccaattgggaaatgtatcctctatattgttgtcaccaaggtccagaacttcaagatttatgcactaagccaaagactgtggtaatggtccttccaa |
37413700 |
T |
|
| Q |
352 |
ttggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcatttgcatatccaatacagaa |
451 |
Q |
| |
|
||| || || ||||||||||| |||| |||| |||||||| ||||| ||| |||| | ||||||||| | ||||||||||||||||||||||| |||| |
|
|
| T |
37413699 |
ttgatttccgttcaactttatcatctcaaatgtatttcctttggaaaaggttctaggaaagcttccatacaagttgttcatttgcatatccaatatagaa |
37413600 |
T |
|
| Q |
452 |
aga |
454 |
Q |
| |
|
||| |
|
|
| T |
37413599 |
aga |
37413597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 37428339 - 37428562
Alignment:
| Q |
13 |
cacagaatcattataataattggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgtt |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||| ||||||||| || | |||||||||| ||||||||||||||||| ||| ||| | ||| |
|
|
| T |
37428339 |
cacagaatcattatagtaattggccttacccatgtactgcaaaccaatttggctatcattcacattcatcattccttgaaaattcctgatgcatgttgtc |
37428438 |
T |
|
| Q |
113 |
ggcacggggccacggaaattgttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgat |
212 |
Q |
| |
|
|||| ||| |||| ||| | ||| | ||| ||| ||||||||| ||| || |||| |||||||| |||||||||||||| |||||| || | || |
|
|
| T |
37428439 |
ggcaagggaccactaaaaattttattatagatgtcgaaaattctcaactt-gggaatggatgtttggtcatagaacaagtgattgtaccatgcagtttat |
37428537 |
T |
|
| Q |
213 |
ttgatcgtaaactgagtacctgtaa |
237 |
Q |
| |
|
|||||| |||| |||| |||||||| |
|
|
| T |
37428538 |
ttgatcttaaaatgagaacctgtaa |
37428562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 37401225 - 37401131
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
||||||||||||||||| | || ||| ||||| ||||||||||||||| ||||||||||||||||||| ||| ||| | |||||||| ||||| |
|
|
| T |
37401225 |
agggaacttgcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattcaatgccagaaggtggaattggaag |
37401131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 37401360 - 37401266
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
|||||||| |||||||| | || ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
37401360 |
agggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaag |
37401266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 551
Target Start/End: Original strand, 37594137 - 37594231
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
||||||||||||||||| | || ||| ||| | ||||||||||||||| ||||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
37594137 |
agggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaag |
37594231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 551
Target Start/End: Original strand, 37711302 - 37711396
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
|||||||| |||||||| | || ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
37711302 |
agggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaag |
37711396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 457 - 551
Target Start/End: Original strand, 37823702 - 37823796
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
|||||||| |||||||| | || ||| ||||| ||||||||||||||| ||||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
37823702 |
agggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtattgaatgccagaaggtggaattggaag |
37823796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 455 - 524
Target Start/End: Complemental strand, 37382690 - 37382621
Alignment:
| Q |
455 |
tcagggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagta |
524 |
Q |
| |
|
||||||||||||| ||||||| ||| ||| |||||| |||||||||||||||||| |||||| ||||||| |
|
|
| T |
37382690 |
tcagggaacttgcgttgcacaatgaaaaatcaatgtttcctgtgaagttgttgttcgagagtaaaaagta |
37382621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 492 - 551
Target Start/End: Original strand, 37711472 - 37711531
Alignment:
| Q |
492 |
tcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||| | |||||||| ||||| |
|
|
| T |
37711472 |
tcctgtgaagttgttatttgagagtgaaaagtattgaatgccagatggtggaattggaag |
37711531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 457 - 551
Target Start/End: Original strand, 37639544 - 37639638
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
|||||||| |||||||| | || ||| ||||| ||||||||||||||| ||||||||||||||||||| ||| ||| | |||||||| ||||| |
|
|
| T |
37639544 |
agggaactggcattgcagaatgttgaagaaatgtatcctgtgaagttgttatttgagagtgaaaagtatttaatgccagaaggtggaattggaag |
37639638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 455 - 551
Target Start/End: Original strand, 37532896 - 37532992
Alignment:
| Q |
455 |
tcagggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
||||| ||||||||||||| | || ||| ||| ||||||||||||||||| |||||||||||||||||| ||| |||| |||||||| ||||| |
|
|
| T |
37532896 |
tcaggtaacttgcattgcagaatgttgaagaaatatctcctgtgaagttgttatttgagagtgaaaagtatccaatgccatcaggtggaattggaag |
37532992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 457 - 525
Target Start/End: Original strand, 37696528 - 37696596
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtat |
525 |
Q |
| |
|
||||||||||||||||| | || ||| ||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
37696528 |
agggaacttgcattgcagaatgttgaagaaatatttcctgtgaagttgttgtttgagagtgaaaagtat |
37696596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 457 - 551
Target Start/End: Complemental strand, 37393239 - 37393145
Alignment:
| Q |
457 |
agggaacttgcattgcacagtgacaaagcaatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
|||||||| |||||||| | || ||| ||| ||||||||||||||||||||||||||| |||||| || ||| |||| |||||||| ||||| |
|
|
| T |
37393239 |
agggaactagcattgcagaatgttgaagaaatatctcctgtgaagttgttgtttgagagtaaaaagtcttcaatgccatcaggtggaattggaag |
37393145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #25
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 486 - 555
Target Start/End: Original strand, 37435537 - 37435606
Alignment:
| Q |
486 |
aatgtctcctgtgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaaggtct |
555 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||||||| ||| |||| || |||||| |||| |||| |
|
|
| T |
37435537 |
aatgtctcctgcgaagttgttgtttgagagcaaaaagtattcaatgccatcggatggaattggaatgtct |
37435606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 497 - 551
Target Start/End: Original strand, 37428578 - 37428632
Alignment:
| Q |
497 |
tgaagttgttgtttgagagtgaaaagtattgaattccatagggtggaatcggaag |
551 |
Q |
| |
|
||||||||||||| |||||| ||||||||| ||| ||||| |||||||| ||||| |
|
|
| T |
37428578 |
tgaagttgttgttagagagtaaaaagtattcaatgccataaggtggaattggaag |
37428632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 172; Significance: 4e-92; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 33 - 444
Target Start/End: Original strand, 14552679 - 14553090
Alignment:
| Q |
33 |
tggccttacccatgtattgcaaaccagatttattgacattcacattaatcattccttgaaaattattgaggcaggatgttggcacggggccacggaaatt |
132 |
Q |
| |
|
|||| ||||||||||||||||||||| || || ||||||| || |||||||||||||| || |||| ||| |||||||||| || ||||| ||||| |
|
|
| T |
14552679 |
tggctttacccatgtattgcaaaccaatttggctgtcattcacgttcatcattccttgaaagttcttgatgcatgatgttggcaaggtgccactaaaatt |
14552778 |
T |
|
| Q |
133 |
gttaccagagacatcgtaaattctcatcttcggaaatgattgtttggtgctagaacaagtgatttcaccatgaagatgatttgatcgtaaactgagtacc |
232 |
Q |
| |
|
||| ||||||||| ||||||||| ||| |||||||| || ||| |||||||||| |||||| | || ||||||||||||||||||||||| || || |
|
|
| T |
14552779 |
gttgttagagacatcaaaaattctcaacttaggaaatgaatgcttgatgctagaacaggtgattgctccgtgaagatgatttgatcgtaaacttagcact |
14552878 |
T |
|
| Q |
233 |
tgtaactcttgcagaacttctaaccaattgggaaatgtatcgtttatgatgttgtctccaaggtccaaaacttcaagttgtgtgcagtgagccaaagact |
332 |
Q |
| |
|
||||||||||| ||| ||||| |||||||||||||||||| | |||| ||||||| |||||||| || |||||||| | || ||||||||||| |||| |
|
|
| T |
14552879 |
tgtaactcttgtagagtttctagccaattgggaaatgtatcctctatgctgttgtcaccaaggtctaatacttcaagatttgaacagtgagccaatgact |
14552978 |
T |
|
| Q |
333 |
gtggtaatggtccctccaattggttgccattcaactttatagtctcgaatgcatttccttccgaaaatgttttaggcatgcttccatagaggttgttcat |
432 |
Q |
| |
|
|||||| |||||| | ||||||||| |||||||||||||||||||| ||||||||||||| ||||| ||| |||| ||| ||||||||||||||||||| |
|
|
| T |
14552979 |
gtggtagtggtcctttcaattggtttccattcaactttatagtctcaaatgcatttccttttgaaaaggttctaggaatgattccatagaggttgttcat |
14553078 |
T |
|
| Q |
433 |
ttgcatatccaa |
444 |
Q |
| |
|
|||||||||||| |
|
|
| T |
14553079 |
ttgcatatccaa |
14553090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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