View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_high_1 (Length: 580)
Name: NF18239_high_1
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_high_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 469; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 20 - 580
Target Start/End: Complemental strand, 51115089 - 51114518
Alignment:
| Q |
20 |
aagccatccattgtatttgaaatattgatacagagaacaaccacctaatttccaaactcaggatttcctttttgataactaacgtgcattcaacactatc |
119 |
Q |
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| T |
51115089 |
aagccatccattgtatttgaaatattgaaacagagaacaaccacctaatttccaaactcaggatttcctttttgataactaacgtgcattcaacactatc |
51114990 |
T |
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| Q |
120 |
taaggttgctactagattttgattataccttgttattgaccatattaaaactaattaaacactcgaatcaatgcagaaaagaatgagtagtttgtcaata |
219 |
Q |
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| T |
51114989 |
taaggttgctactagattttgattataccttgttattgaccatattaaaactaattaaacactcgaatcaatgcagaaaagaatgagtagtcagtcaata |
51114890 |
T |
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| Q |
220 |
gcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaactttcaaca |
319 |
Q |
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| T |
51114889 |
gtttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaactttcaaca |
51114790 |
T |
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| Q |
320 |
caacgaggaattagaagaatgttgattagttttaagatagtttcacannnnnnnnaagaagaagtcaaactaacacaccaaaattggcact-aagaggat |
418 |
Q |
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| T |
51114789 |
cgacgaggaattagaagaatattgattagttttaagatagtttcacattttttttaagaagaagtcaaactaacacaccaaaattggcactgaagaggat |
51114690 |
T |
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| Q |
419 |
caaaccagagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtaccttatttgccgtgtgaaatgaact------- |
511 |
Q |
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| T |
51114689 |
caaactagagacttgagaagaacacactccgatgtcacattttaatgtaggtttcattttgttttgtatcttatttgccgtgtgaaatgaactacagaca |
51114590 |
T |
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| Q |
512 |
---acatttcaagcatgcattctatctaacttctaatccaacacataaataaggttcaaacaccaatggaca |
580 |
Q |
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| T |
51114589 |
tacacatttcaagcatgcattctatctaacttctaatccaacaaataaataaggttcaaacaccaatggaca |
51114518 |
T |
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Target: chr8 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 231 - 314
Target Start/End: Complemental strand, 5768905 - 5768822
Alignment:
| Q |
231 |
caatatcagacaaagcataatttcaaaataagaaacataatatgcaggcgtatgcagaaagatgccaattttcgatggaacttt |
314 |
Q |
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| T |
5768905 |
caatatcaaacaaaggataacttcaaaataagaaacataatatgtagccataagcagaaagatgccaaatttccatggaacttt |
5768822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 178 - 322
Target Start/End: Complemental strand, 1118800 - 1118657
Alignment:
| Q |
178 |
acactcgaatcaatgcagaaaagaatgagtagtttgtcaatagcttcaaaaaccaatatcagacaaagcataatttcaaaataagaaacataatatgcag |
277 |
Q |
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| T |
1118800 |
acactcaaatcaaagcagagaagaaacagtacgtagtcaatatcttcaaaaac-aataccagacaaagcataatttaagaataagaaacataatatgtgg |
1118702 |
T |
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| Q |
278 |
gcgtatgcagaaagatgccaattttcgatggaactttcaacacaa |
322 |
Q |
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| T |
1118701 |
gtctcagcagaaagatgcatattttccatggaattatcaacacaa |
1118657 |
T |
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