View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_high_10 (Length: 317)
Name: NF18239_high_10
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_high_10 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 172 - 299
Target Start/End: Complemental strand, 24860836 - 24860708
Alignment:
| Q |
172 |
gaaaccagtaatttcatttcatttcattccgataataataaacattacatcaccgata--cgattacattagaaaacgaaacgctaaatcttcaaaattt |
269 |
Q |
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| T |
24860836 |
gaaaccagtaatttcatttcatttcattccgataataataa-cattacatcaccgatatacgattacattagaaaacgaaacgctaaatcttcgaaattt |
24860738 |
T |
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| Q |
270 |
caagtaaattacattaataaccctaagcct |
299 |
Q |
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| T |
24860737 |
caagtaaattacattaataaccctaagcct |
24860708 |
T |
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Target: chr4; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 24860995 - 24860928
Alignment:
| Q |
16 |
attcccgccaattaaatgggccccaataaagtt--gtgggccacacttaagcccagcccaatatcacc |
81 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
24860995 |
attcccgccaattaaatgggccccaataaagttttgtgggccacacttaagcccagcccaatatcacc |
24860928 |
T |
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