View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18239_high_7 (Length: 409)
Name: NF18239_high_7
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_high_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 236
Target Start/End: Original strand, 4607310 - 4607533
Alignment:
| Q |
13 |
aatataggagtatcacatggtagtattaattagcattgagtggcaacaaaaccaaccaaatttggagtattccaaagatatccactactagaagttcacc |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607310 |
aatataggagtatcacatggtagtattaattagcattgagtggcaacaaaaccaaccaaatttggagtattccaaagatatccactactagaagttcacc |
4607409 |
T |
|
| Q |
113 |
taagaatagaatttaatgctatcatcagttatgctaaaatctcattgactgttcctgctcctccgtttatttctcatctgagactatttcaaaagccact |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607410 |
taagaatagaatttaatgctatcatcagttatgctaaaatctcattgactgttcctgctcctccgtttatttctcatctgagactatttcaaaagccact |
4607509 |
T |
|
| Q |
213 |
tttctgttacagattttactatca |
236 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4607510 |
tttctgttacagattttactatca |
4607533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 335 - 391
Target Start/End: Original strand, 4607632 - 4607688
Alignment:
| Q |
335 |
cattatcaatgaccctattttggattattagtggggacaaagaagcttatataaagt |
391 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4607632 |
cattatcaatgaccctattttggattattagtggggacaaagaagcttatataaagt |
4607688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University