View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_low_13 (Length: 289)
Name: NF18239_low_13
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 113246 - 112974
Alignment:
| Q |
1 |
agataatttctatcaaagcaggaagaatgatgtcactatcaattgataatcttggtgccctatggatgtggggaaactgtccagatcaaagcaaagaagg |
100 |
Q |
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| T |
113246 |
agataatttctatcaaagcaggaggaatgatgtcactatcaattgataatcttggtgccctatggatgtggggaaactgtccacatcaaagcaaagaagg |
113147 |
T |
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| Q |
101 |
aatattctcaatagtaagcaatttcactccaacaccagtttgggatttccatggtcacacagtagtaaaagttgcatgtggaaatgagcacattatagca |
200 |
Q |
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| T |
113146 |
aatattctcaatagtaagcaatttcactccaacaccagtttgggatttccatggtcacacagtagtaaaagttgcatgtggaaatgaacacattatagca |
113047 |
T |
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| Q |
201 |
ctagttagtgttggagaatcatacaatggtgaaaatgatgatctcatttgttactcttggggtaacaacaatc |
273 |
Q |
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| T |
113046 |
ctagttagtgttggagaatcatacaatggtgaaaatgatgatctcatttgttactcttggggtaacaacaatc |
112974 |
T |
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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 190
Target Start/End: Complemental strand, 51294150 - 51293973
Alignment:
| Q |
13 |
tcaaagcaggaagaatgatgtcactatcaattgataatcttggtgccctatggatgtggggaaactgtccagatcaaagcaaagaa---ggaatattctc |
109 |
Q |
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| T |
51294150 |
tcaaagcaggaggaatgatgtctctggctattgataatcgcggaaccctatggatgtggggaaacatcccacaagaaagcaaagaaagtgggatat-ctc |
51294052 |
T |
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| Q |
110 |
aatagtaagcaatttcactccaacaccagtttgggatttccatggtcacacagtagtaaaagttgcatgtggaaatgagca |
190 |
Q |
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| T |
51294051 |
--ttgtaagcagtttcactccaacgccagtctgggattttcacggtcgaactgttgtcaaggttgcatgtggaaacgagca |
51293973 |
T |
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