View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_low_15 (Length: 239)
Name: NF18239_low_15
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_15 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 38945285 - 38945047
Alignment:
| Q |
1 |
aaaggatagatgtttgttgtgtgtccttattcacaatttttaatatttcaatataattattccaaccatgcatgacctgcacgtttattgttctctttgt |
100 |
Q |
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| T |
38945285 |
aaaggttagatgtttgttgtgtgtccttattcacaatttttaatatttcaatataattattccaaccatgcatgacctgcacgtttattgttctctttgt |
38945186 |
T |
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| Q |
101 |
ttttatcgatggattatttttcgttttgattcatgataactatgtaggtagacacgttatacctcatatctagatgtcgagttgctcaccaaattttgac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38945185 |
ttttatcgatggattatttttcgttttgattcatgataactctgtaggtagacacgttatacctcatatctagatgtcgagttgctcaccaaattttgac |
38945086 |
T |
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| Q |
201 |
aatcaaccttaattgctcagttttcacatcttgatactc |
239 |
Q |
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| T |
38945085 |
aatcaaccttaattgctcagttttcacatcttgatactc |
38945047 |
T |
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