View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_low_16 (Length: 237)
Name: NF18239_low_16
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_16 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 38868442 - 38868661
Alignment:
| Q |
18 |
gattccttgttttagcagccaatcatcagtttgttacacaaatatgaaatatttatataaaggagtttgctaattagaccaatctaaaaacatgaagtct |
117 |
Q |
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| T |
38868442 |
gattccttgttttagcagccaatcatcagtttgttgcacaaatatgaaatatttatacaaaggagtttgctaattagaccaatctaaaaacatgaagtct |
38868541 |
T |
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| Q |
118 |
aagtaggcaagtgtgtacctttttatttgttatgaatgtctcaaatactttaactcacttttgttataaacacatttatgtctcaaatagacaattacaa |
217 |
Q |
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| T |
38868542 |
aagtaggcaagtgtgtacctttttatttgttatgaatgtctcaaatactttaactcacttttgttataaacacatttatgtctcaaatagacaattacaa |
38868641 |
T |
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| Q |
218 |
acattaaacaatagtttttt |
237 |
Q |
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| T |
38868642 |
acattaaacaatagtttttt |
38868661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 26570968 - 26571023
Alignment:
| Q |
173 |
cacttttgttataaacacatttatgtctcaaatagacaattacaaacattaaacaa |
228 |
Q |
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| T |
26570968 |
cacttttattatcaacatatttatgtctcaaatagacaattacaaacattaaacaa |
26571023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 28598737 - 28598779
Alignment:
| Q |
186 |
aacacatttatgtctcaaatagacaattacaaacattaaacaa |
228 |
Q |
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| T |
28598737 |
aacacctttatgtttcaaatagacaattataaacattaaacaa |
28598779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 29468117 - 29468069
Alignment:
| Q |
181 |
ttataaacacatttatgtctcaaatagacaattacaaacattaaacaat |
229 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29468117 |
ttatgaacacatttatgtctcaaatagacaattacaaacattaatcaat |
29468069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 1283021 - 1283076
Alignment:
| Q |
173 |
cacttttgttataaacacatttatgtctcaaatagacaattacaaacattaaacaa |
228 |
Q |
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| T |
1283021 |
cacttttgttatgaacacatttatgtttcaaatatacagttacaaacattaaacaa |
1283076 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 16664614 - 16664656
Alignment:
| Q |
186 |
aacacatttatgtctcaaatagacaattacaaacattaaacaa |
228 |
Q |
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| T |
16664614 |
aacacatttttgtctcaaatagacaattatcaacattaaacaa |
16664656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 17638984 - 17639026
Alignment:
| Q |
186 |
aacacatttatgtctcaaatagacaattacaaacattaaacaa |
228 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||| |
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| T |
17638984 |
aacacatttttgtctcaaatagacaattatcaacattaaacaa |
17639026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 20719195 - 20719249
Alignment:
| Q |
174 |
acttttgttataaacacatttatgtctcaaatagacaattacaaacattaaacaa |
228 |
Q |
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|||||||||| |||| ||||||||||||||||| ||||| ||||||||||||| |
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| T |
20719195 |
acttttgttaggaacatgtttatgtctcaaatagataattataaacattaaacaa |
20719249 |
T |
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