View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_low_2 (Length: 552)
Name: NF18239_low_2
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_2 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 483; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 483; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 39882403 - 39882950
Alignment:
| Q |
1 |
tcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccctaaatccacaaattt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
39882403 |
tcttccttccctttctttgcattaatgatcaaagtagtagaaaatcaagtttcccctcttactctaatctctcgtggaacacccctaaatccacaaattt |
39882502 |
T |
|
| Q |
101 |
ctttatacaaaaacctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattcttgtgcaagttctaagg |
200 |
Q |
| |
|
| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
39882503 |
ccttatacaaaaaactatta----atagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatttccttgtgcaagttctaagg |
39882598 |
T |
|
| Q |
201 |
tactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttgtgagt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39882599 |
tactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttgtgagt |
39882698 |
T |
|
| Q |
301 |
acctcatgagctctagagttcggctaggaagaagagctctcaagataagggctctagtcttgaccatgttttaaatatataaaaaatcttgggcaataac |
400 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
39882699 |
acctcgtgagctctagagttcggctaggaagaagagctctcaagacaagggctctagtcttgaccatgttttaaatatataaaaaatcttaggcaataat |
39882798 |
T |
|
| Q |
401 |
ttaacaacgacatttcagatatgggaaattctattcacaatcttatctagggatgctttaccattccttctaagatcaaggagctaaatcagattcttat |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39882799 |
ttaacaacgacatttcagatatgggaaattctattcacaatcttaactaggaatgttttaccattccttctaagatcaaggagctaaatcagattcttat |
39882898 |
T |
|
| Q |
501 |
cactatgattccgaaatgtaatgatcctattaaagtgaatcacctcagaccc |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39882899 |
cactatgattccgaaatgtaatgatcctattaaagtgaatcacctcagaccc |
39882950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 16 - 301
Target Start/End: Complemental strand, 11037171 - 11036888
Alignment:
| Q |
16 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
114 |
Q |
| |
|
|||| |||||||||| |||||||| |||||| ||||||||||||| |||||||||||||||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
11037171 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcgtggaccaccccctaaatcctcaaatttctttatacaaaaac |
11037072 |
T |
|
| Q |
115 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt-gtgcaagttctaaggtactctaatgtct |
213 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||| | |||| |
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| T |
11037071 |
ctattaaa----agagaatgaaaatgagttgccacacccacaccacacgtcatgatcatcaccctttcctttgtgcaagttctaaggtactccattgtcc |
11036976 |
T |
|
| Q |
214 |
cgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttgtgagta |
301 |
Q |
| |
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| ||||||||||||||| | | |||| |||||||||| | ||||| ||||||||||||| |||||||| |||| |||||||||||||| |
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| T |
11036975 |
cattcttttgcttaattgttttcatattccaatttctaattctagcattattttctttgaagcttgtgctcctcttcctttgtgagta |
11036888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 16 - 296
Target Start/End: Complemental strand, 13164193 - 13163915
Alignment:
| Q |
16 |
tttgcattaatgatcaaagtagtagaaaatcaggtttcccctcttattctaatctctcgtggaacacccc-taaatccacaaatttctttatacaaaaac |
114 |
Q |
| |
|
|||| |||||||||| |||||||| |||||| ||||||||||||| ||||||||||| || |||||||| ||||||| ||||||||||||||||||||| |
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|
| T |
13164193 |
tttgtattaatgatcccagtagtaggaaatcaagtttcccctcttactctaatctctcatgaaacaccccctaaatcctcaaatttctttatacaaaaac |
13164094 |
T |
|
| Q |
115 |
ctattaattaatagagaattaaaatgagttgccacacccacaccacacgtcatgatcatcaccatattctt-gtgcaagttctaaggtactctaatgtct |
213 |
Q |
| |
|
||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||| | | ||| |||||||||||||||||||| | |||| |
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| T |
13164093 |
ctattaaa----agataatgaaaatgagttgccacacccacaccagacgtcatgatcatcaccctttcctttgtgcaagttctaaggtactccattgtcc |
13163998 |
T |
|
| Q |
214 |
cgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctttgt |
296 |
Q |
| |
|
| ||||||||||||||| | | |||| |||||||||| ||||||| ||||||||||||| |||||||| |||| ||||||||| |
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| T |
13163997 |
cattcttttgcttaattgttttcatattccaatttctaagtctagcattattttctttgaagcttgtgctcctcttcctttgt |
13163915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 187 - 349
Target Start/End: Complemental strand, 547783 - 547622
Alignment:
| Q |
187 |
tgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttcct |
286 |
Q |
| |
|
|||||||||| |||||| |||| || || ||||||||||||||||| | ||||||||||| | | ||| ||||||||||||||||||||||||||||||| |
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| T |
547783 |
tgcaagttctgaggtac-ctaaggtgtcattcttttgcttaattattttcatactccaatctttaagtttaggattattttctttgtagcttgtgttcct |
547685 |
T |
|
| Q |
287 |
tttcctttgtgagtacctcatgagctctagagttcggctaggaagaagagctctcaagataag |
349 |
Q |
| |
|
||||||||||||| ||||| || | ||||||||| |||||||||||||||||| |||| |||| |
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|
| T |
547684 |
tttcctttgtgagaacctcgtgggttctagagtttggctaggaagaagagctcccaaggtaag |
547622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 184 - 352
Target Start/End: Complemental strand, 2270005 - 2269840
Alignment:
| Q |
184 |
ttgtgcaagttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtcta-ggattattttctttgtagcttgtgt |
282 |
Q |
| |
|
|||| ||||||||||||||| ||||||||| ||||||| ||||||||| | ||||||||||||||| |||||| ||||||||||||||| ||||||| |
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| T |
2270005 |
ttgtacaagttctaaggtaccctaatgtct--ttctttt-cttaattattttcatactccaatttctaagtctatggattattttctttgaagcttgtcc |
2269909 |
T |
|
| Q |
283 |
tccttttcctttgtgagtacctcatgagctctagagttcggctaggaagaagagctctcaagataagggc |
352 |
Q |
| |
|
||||||||||| ||||||||||| || | ||||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
2269908 |
tccttttcctt-gtgagtacctcgtgggttctagagttcggctaggaagaagagctctcaaggtaagggc |
2269840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 194 - 339
Target Start/End: Original strand, 28201092 - 28201237
Alignment:
| Q |
194 |
tctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttcctt |
293 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||| | || |||||||||||| ||| |||||||||||| ||||||||||||||||||||| ||| |
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|
| T |
28201092 |
tctaagatactccgatgtctcattcttttgcttaattattttcacactccaatttctaagtttaggattattttatttgtagcttgtgttcctttttctt |
28201191 |
T |
|
| Q |
294 |
tgtgagtacctcatgagctctagagttcggctaggaagaagagctc |
339 |
Q |
| |
|
|||||||| ||| || | |||||||||||||||||||||||||| |
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|
| T |
28201192 |
tgtgagtatctcgtggcttttagagttcggctaggaagaagagctc |
28201237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 6e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 191 - 301
Target Start/End: Complemental strand, 40729890 - 40729782
Alignment:
| Q |
191 |
agttctaaggtactctaatgtctcgttcttttgcttaattatatacatactccaatttctgagtctaggattattttctttgtagcttgtgttccttttc |
290 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||| ||||||||| | ||||| ||||||||| ||||||| ||||||||||||| |||||||| ||| ||| |
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| T |
40729890 |
agttctaaagtactctaatgtctcattcattt-cttaattattttcataccccaatttctaagtctagcattattttctttgaagcttgtgctcc-gttc |
40729793 |
T |
|
| Q |
291 |
ctttgtgagta |
301 |
Q |
| |
|
||||||||||| |
|
|
| T |
40729792 |
ctttgtgagta |
40729782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 314 - 374
Target Start/End: Original strand, 22403718 - 22403778
Alignment:
| Q |
314 |
tagagttcggctaggaagaagagctctcaagataagggctctagtcttgaccatgttttaa |
374 |
Q |
| |
|
|||||||||||||||||||| || |||| || |||||||||||||||| |||||| ||||| |
|
|
| T |
22403718 |
tagagttcggctaggaagaaaagatctcgaggtaagggctctagtctttaccatgatttaa |
22403778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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