View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18239_low_3 (Length: 532)

Name: NF18239_low_3
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18239_low_3
NF18239_low_3
[»] chr6 (13 HSPs)
chr6 (20-268)||(9997337-9997585)
chr6 (306-521)||(9997623-9997838)
chr6 (20-200)||(10003202-10003382)
chr6 (21-199)||(10012067-10012245)
chr6 (20-170)||(9990534-9990684)
chr6 (474-512)||(34446653-34446691)
chr6 (473-511)||(34595215-34595253)
chr6 (474-511)||(17327590-17327627)
chr6 (473-510)||(31385011-31385048)
chr6 (473-510)||(31959231-31959268)
chr6 (475-511)||(4878025-4878061)
chr6 (475-511)||(10649371-10649407)
chr6 (473-513)||(34073276-34073316)
[»] chr7 (9 HSPs)
chr7 (21-172)||(33356209-33356360)
chr7 (21-115)||(33348264-33348358)
chr7 (473-511)||(5409771-5409809)
chr7 (473-511)||(9778586-9778624)
chr7 (473-514)||(6490797-6490838)
chr7 (473-510)||(32287404-32287441)
chr7 (471-511)||(28973881-28973921)
chr7 (475-511)||(29763129-29763165)
chr7 (475-511)||(35862034-35862070)
[»] chr1 (10 HSPs)
chr1 (472-514)||(47989588-47989630)
chr1 (474-511)||(36878548-36878585)
chr1 (474-513)||(35702540-35702579)
chr1 (476-513)||(22515825-22515862)
chr1 (474-511)||(37598913-37598950)
chr1 (474-511)||(40747707-40747744)
chr1 (475-511)||(7918154-7918190)
chr1 (473-513)||(16812637-16812677)
chr1 (475-511)||(22947813-22947849)
chr1 (473-509)||(42359391-42359427)
[»] chr5 (12 HSPs)
chr5 (473-514)||(17123128-17123169)
chr5 (472-512)||(35017123-35017163)
chr5 (473-511)||(14873603-14873641)
chr5 (474-511)||(21576685-21576722)
chr5 (475-516)||(24906247-24906288)
chr5 (341-378)||(28514328-28514365)
chr5 (377-437)||(35034116-35034177)
chr5 (377-437)||(35056364-35056425)
chr5 (475-511)||(10298633-10298669)
chr5 (473-509)||(21190998-21191034)
chr5 (475-511)||(22423764-22423800)
chr5 (476-512)||(39698636-39698672)
[»] chr8 (4 HSPs)
chr8 (473-509)||(16987994-16988030)
chr8 (473-511)||(29510233-29510271)
chr8 (473-514)||(16641906-16641947)
chr8 (475-511)||(34127172-34127208)
[»] chr3 (4 HSPs)
chr3 (473-513)||(34185050-34185090)
chr3 (473-511)||(20503546-20503584)
chr3 (475-511)||(4990912-4990948)
chr3 (475-511)||(21861658-21861694)
[»] chr2 (5 HSPs)
chr2 (473-513)||(18840951-18840991)
chr2 (352-436)||(38265551-38265635)
chr2 (473-511)||(37419835-37419873)
chr2 (474-511)||(26769604-26769641)
chr2 (473-509)||(2438661-2438697)
[»] chr4 (7 HSPs)
chr4 (473-512)||(23292925-23292964)
chr4 (473-511)||(5775304-5775342)
chr4 (473-511)||(40784034-40784072)
chr4 (473-511)||(53381530-53381568)
chr4 (474-511)||(715545-715582)
chr4 (474-511)||(752871-752908)
chr4 (475-515)||(4383449-4383489)
[»] scaffold0027 (1 HSPs)
scaffold0027 (476-514)||(46741-46779)
[»] scaffold0793 (1 HSPs)
scaffold0793 (474-511)||(4821-4858)
[»] scaffold0652 (1 HSPs)
scaffold0652 (473-510)||(403-440)
[»] scaffold0475 (1 HSPs)
scaffold0475 (474-511)||(3390-3427)


Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 20 - 268
Target Start/End: Original strand, 9997337 - 9997585
Alignment:
Q  20 gtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997337 gtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgac 9997436  T
Q  120 ctccctgcaaattggtcaaatagtgttccatatgttgctggaaagtaagaattcatgatgctgttgcagttttatatatgcatgtcttctgtttaattac 219  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||    
T  9997437 ctccctgcaaattggtcaaatggtgttccatatgttgctggaaagtaagaattcacgatgctgttgcagttttatatatgcatgtcttctgtctaattac 9997536  T
Q  220 atatgagaatcgactgtgaccggaaaattgaattgaaccaatttagttc 268  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997537 atatgagaatcgactgtgaccggaaaattgaattgaaccaatttagttc 9997585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 306 - 521
Target Start/End: Original strand, 9997623 - 9997838
Alignment:
Q  306 aacagtcataataattggtatttaatcaacattattaattatcagttaataataacaatttgatacagtttggttcgaaaaagtatagtttgatttgttg 405  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9997623 aacagtcataataattggtatttaatcaacagtattaattatccgttaataataacaatttgatacagtttggttcgaaaaagtatagtttgatttgttg 9997722  T
Q  406 taaaggtagttctggttcagtttgaaaccacgttgtaggtggcccaaacctttttaccaaatcgattcgggacacccctaatcccaggagtgtccgtgct 505  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  9997723 taaaggtagttctggttcggtttgaaaccacgttgtaggtggcccaaacctttttaccaaatcgattcaggacacccctaatctgaggagtgtccgtgct 9997822  T
Q  506 tcatagttttattcat 521  Q
    || |||||||||||||    
T  9997823 tcgtagttttattcat 9997838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 20 - 200
Target Start/End: Original strand, 10003202 - 10003382
Alignment:
Q  20 gtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||| | ||||||||| | |||||||||    
T  10003202 gtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaaattgtccaagctatgactgagttaattccaggattacaaggtgac 10003301  T
Q  120 ctccctgcaaattggtcaaatagtgttccatatgttgctggaaagtaagaattcatgatgctgttgcagttttatatatgc 200  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||  ||||||||||| ||||  |||||||||||    
T  10003302 ctccctgcaaattggtcaaatggtgttccatatgttgttggaaagtaagagatcatgatgctgctgcatctttatatatgc 10003382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 21 - 199
Target Start/End: Original strand, 10012067 - 10012245
Alignment:
Q  21 tgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgacc 120  Q
    ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||| ||| ||||||||||| | ||||| ||||| ||||| ||||    
T  10012067 tgtagagatccaagatggggtagatgttacgaaagttacagtgaagatcataaaatagtccaatctatgactgagttaattccgggactgcaaggcgacc 10012166  T
Q  121 tccctgcaaattggtcaaatagtgttccatatgttgctggaaagtaagaattcatgatgctgttgcagttttatatatg 199  Q
    | |||||||||||||||||  ||||||||||||| | ||||| |||||||||| ||||| ||||||||||| |||||||    
T  10012167 tacctgcaaattggtcaaagggtgttccatatgtcggtggaaggtaagaattcttgatgttgttgcagtttcatatatg 10012245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 20 - 170
Target Start/End: Original strand, 9990534 - 9990684
Alignment:
Q  20 gtgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgac 119  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| ||||||| ||| | |||||||| || |||||||||    
T  9990534 gtgtagagatccaagatggggtagatgttatgaaagttatagcgaagatcataaaatagtccaatctatgaccgagttaattccagggctgcaaggtgac 9990633  T
Q  120 ctccctgcaaattggtcaaatagtgttccatatgttgctggaaagtaagaa 170  Q
    || |||||||||||||||||  ||||||||||||||| ||||| |||||||    
T  9990634 ctacctgcaaattggtcaaagggtgttccatatgttggtggaaggtaagaa 9990684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 474 - 512
Target Start/End: Original strand, 34446653 - 34446691
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatagt 512  Q
    ||||||| |||||||| ||||||||||||||||||||||    
T  34446653 gggacacacctaatccaaggagtgtccgtgcttcatagt 34446691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 34595215 - 34595253
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  34595215 cgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 17327627 - 17327590
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  17327627 gggacacgcctaatccgaggagtgtccgtgcttcatag 17327590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 31385011 - 31385048
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcata 510  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  31385011 cgggacacgcctaatccaaggagtgtccgtgcttcata 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 510
Target Start/End: Original strand, 31959231 - 31959268
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcata 510  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  31959231 cgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 4878025 - 4878061
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4878025 ggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 10649371 - 10649407
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  10649371 ggacacgcctaatccaaggagtgtccgtgcttcatag 10649407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 34073316 - 34073276
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagtt 513  Q
    ||||||||| ||||| | |||||||||||||||||||||||    
T  34073316 cgggacacctctaattcgaggagtgtccgtgcttcatagtt 34073276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 6e-23; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 33356360 - 33356209
Alignment:
Q  21 tgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaaggtgacc 120  Q
    ||||||||||||||||||||| | ||||| ||||| || |||||||||| |||||||||||||||||||||||| ||||| |||||| | ||||| |||     
T  33356360 tgtagagatccaagatggggtcggtgttacgaaagctacagtgaagatcctaaagtagttcaagctatgactgaaatcataccaggaatgcaaggggacg 33356261  T
Q  121 tccctgcaaattggtcaaatagtgttccatatgttgctggaaagtaagaatt 172  Q
    | ||||  |||  | |||   ||||||| | | |||||||||||||||||||    
T  33356260 ttcctgataatatgccaatgggtgttccttttattgctggaaagtaagaatt 33356209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 21 - 115
Target Start/End: Complemental strand, 33348358 - 33348264
Alignment:
Q  21 tgtagagatccaagatggggtagatgttatgaaagttatagtgaagatcataaagtagttcaagctatgactgagatcattccaggacttcaagg 115  Q
    |||||| |||| ||||||||||| ||||||||||| || ||| |||||| |||| ||||||||||||||||||| |||||  ||||||| |||||    
T  33348358 tgtagaaatccgagatggggtaggtgttatgaaagctacagtcaagatcctaaaatagttcaagctatgactgaaatcatatcaggactgcaagg 33348264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 5409809 - 5409771
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  5409809 cgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 9778586 - 9778624
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  9778586 cgggacacgcctaatccaaggagtgtccgtgcttcatag 9778624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Original strand, 6490797 - 6490838
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagttt 514  Q
    |||||||| | |||||| ||||||||||||||||||||||||    
T  6490797 cgggacacgcttaatccgaggagtgtccgtgcttcatagttt 6490838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 32287441 - 32287404
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcata 510  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  32287441 cgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 471 - 511
Target Start/End: Complemental strand, 28973921 - 28973881
Alignment:
Q  471 ttcgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||||| |||||||| ||| |||||||||||||||||    
T  28973921 ttcgggacacgcctaatccgaggtgtgtccgtgcttcatag 28973881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 29763165 - 29763129
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  29763165 ggacacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 35862034 - 35862070
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  35862034 ggacacgcctaatccgaggagtgtccgtgcttcatag 35862070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 472 - 514
Target Start/End: Original strand, 47989588 - 47989630
Alignment:
Q  472 tcgggacacccctaatcccaggagtgtccgtgcttcatagttt 514  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  47989588 tcgggacacgcctaatccgaggagtgtccgtgcttcatagttt 47989630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 36878548 - 36878585
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  36878548 gggacacgcctaatcccaggagtgtccgtgcttcatag 36878585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 35702579 - 35702540
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatagtt 513  Q
    ||||||| |||||||| |||||||||||||||||||||||    
T  35702579 gggacacgcctaatccgaggagtgtccgtgcttcatagtt 35702540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 513
Target Start/End: Complemental strand, 22515862 - 22515825
Alignment:
Q  476 gacacccctaatcccaggagtgtccgtgcttcatagtt 513  Q
    ||||| |||||||| |||||||||||||||||||||||    
T  22515862 gacacgcctaatccgaggagtgtccgtgcttcatagtt 22515825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 37598913 - 37598950
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  37598913 gggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 40747744 - 40747707
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||||||||||| ||||| |||||||||||||||    
T  40747744 gggacacccctaatccgaggagcgtccgtgcttcatag 40747707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 7918190 - 7918154
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  7918190 ggacacacctaatccgaggagtgtccgtgcttcatag 7918154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 513
Target Start/End: Original strand, 16812637 - 16812677
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagtt 513  Q
    |||||||| |||||||  |||||||||||||||||||||||    
T  16812637 cgggacacgcctaatctgaggagtgtccgtgcttcatagtt 16812677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 22947813 - 22947849
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  22947813 ggacacgcctaatccgaggagtgtccgtgcttcatag 22947849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 42359427 - 42359391
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcat 509  Q
    |||||||| |||||||| |||||||||||||||||||    
T  42359427 cgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 473 - 514
Target Start/End: Original strand, 17123128 - 17123169
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagttt 514  Q
    |||||||| |||||||| ||||||||||||||||||||||||    
T  17123128 cgggacacgcctaatccgaggagtgtccgtgcttcatagttt 17123169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 512
Target Start/End: Original strand, 35017123 - 35017163
Alignment:
Q  472 tcgggacacccctaatcccaggagtgtccgtgcttcatagt 512  Q
    ||||||||| |||||||| ||||||||||||||||||||||    
T  35017123 tcgggacacgcctaatccgaggagtgtccgtgcttcatagt 35017163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 14873603 - 14873641
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  14873603 cgggacacgcctaatccgaggagtgtccgtgcttcatag 14873641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 21576722 - 21576685
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  21576722 gggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 475 - 516
Target Start/End: Complemental strand, 24906288 - 24906247
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatagtttta 516  Q
    |||||| |||||| | ||||||||||||||||||||||||||    
T  24906288 ggacacgcctaattcgaggagtgtccgtgcttcatagtttta 24906247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 341 - 378
Target Start/End: Original strand, 28514328 - 28514365
Alignment:
Q  341 taattatcagttaataataacaatttgatacagtttgg 378  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  28514328 taattatcagttaataataataatttggtacagtttgg 28514365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 35034116 - 35034177
Alignment:
Q  377 ggttcgaaaaagtatagtttgatt-tgttgtaaaggtagttctggttcagtttgaaaccacg 437  Q
    ||||| |||||||| |||||| || | |||||||||||||||||||||| || |||||||||    
T  35034116 ggttcaaaaaagtacagtttggttcttttgtaaaggtagttctggttcaattcgaaaccacg 35034177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 35056364 - 35056425
Alignment:
Q  377 ggttcgaaaaagtatagtttgatt-tgttgtaaaggtagttctggttcagtttgaaaccacg 437  Q
    ||||| |||||||| |||||| || | |||||||||||||||||||||| || |||||||||    
T  35056364 ggttcaaaaaagtacagtttggttcttttgtaaaggtagttctggttcaattcgaaaccacg 35056425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 10298633 - 10298669
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  10298633 ggacacgcctaatccgaggagtgtccgtgcttcatag 10298669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 21191034 - 21190998
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcat 509  Q
    |||||||| |||||||| |||||||||||||||||||    
T  21191034 cgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 22423800 - 22423764
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  22423800 ggacacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 476 - 512
Target Start/End: Original strand, 39698636 - 39698672
Alignment:
Q  476 gacacccctaatcccaggagtgtccgtgcttcatagt 512  Q
    ||||| |||||||| ||||||||||||||||||||||    
T  39698636 gacacgcctaatccgaggagtgtccgtgcttcatagt 39698672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 509
Target Start/End: Original strand, 16987994 - 16988030
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcat 509  Q
    ||||||||||||||||| |||||||||||||||||||    
T  16987994 cgggacacccctaatccgaggagtgtccgtgcttcat 16988030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 29510271 - 29510233
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  29510271 cgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 514
Target Start/End: Complemental strand, 16641947 - 16641906
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagttt 514  Q
    |||||||| |||||||| ||||||||| ||||||||||||||    
T  16641947 cgggacacacctaatccgaggagtgtctgtgcttcatagttt 16641906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 34127208 - 34127172
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  34127208 ggacacacctaatccaaggagtgtccgtgcttcatag 34127172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 34185090 - 34185050
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagtt 513  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  34185090 cgggacacgcctaatccgaggagtgtccgtgcttcatagtt 34185050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 20503546 - 20503584
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  20503546 cgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Complemental strand, 4990948 - 4990912
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  4990948 ggacacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 511
Target Start/End: Original strand, 21861658 - 21861694
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||| |||||||| |||||||||||||||||||||    
T  21861658 ggacacacctaatccgaggagtgtccgtgcttcatag 21861694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 473 - 513
Target Start/End: Complemental strand, 18840991 - 18840951
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagtt 513  Q
    |||||||| |||||||| |||||||||||||||||||||||    
T  18840991 cgggacacacctaatccgaggagtgtccgtgcttcatagtt 18840951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 436
Target Start/End: Original strand, 38265551 - 38265635
Alignment:
Q  352 taataataacaatttgatacagtttggttcgaaaaagtatagtttgatttgttgtaaaggtagttctggttcagtttgaaaccac 436  Q
    |||||||||||||||| ||  ||| || ||||||||||| |||| |  || |||||||| |||||| ||||| ||||||||||||    
T  38265551 taataataacaatttggtagggttcggctcgaaaaagtacagttcggcttcttgtaaagctagttcaggttcggtttgaaaccac 38265635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 37419835 - 37419873
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  37419835 cgggacacgcctaatccgaggagtgtccgtgcttcatag 37419873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 26769604 - 26769641
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  26769604 gggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 473 - 509
Target Start/End: Complemental strand, 2438697 - 2438661
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcat 509  Q
    |||||||| |||||||| |||||||||||||||||||    
T  2438697 cgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 473 - 512
Target Start/End: Complemental strand, 23292964 - 23292925
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatagt 512  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  23292964 cgggacacgcctaatccgaggagtgtccgtgcttcatagt 23292925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 5775342 - 5775304
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  5775342 cgggacacgcctaatccgaggagtgtccgtgcttcatag 5775304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Original strand, 40784034 - 40784072
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  40784034 cgggacacacctaatccgaggagtgtccgtgcttcatag 40784072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 473 - 511
Target Start/End: Complemental strand, 53381568 - 53381530
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    |||||||| |||||||| |||||||||||||||||||||    
T  53381568 cgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 715582 - 715545
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  715582 gggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 752908 - 752871
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  752908 gggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 475 - 515
Target Start/End: Original strand, 4383449 - 4383489
Alignment:
Q  475 ggacacccctaatcccaggagtgtccgtgcttcatagtttt 515  Q
    |||||| |||||||| |||||||||||||||||||| ||||    
T  4383449 ggacacgcctaatccgaggagtgtccgtgcttcatattttt 4383489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 476 - 514
Target Start/End: Original strand, 46741 - 46779
Alignment:
Q  476 gacacccctaatcccaggagtgtccgtgcttcatagttt 514  Q
    ||||| |||||||| ||||||||||||||||||||||||    
T  46741 gacacgcctaatccgaggagtgtccgtgcttcatagttt 46779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Complemental strand, 4858 - 4821
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  4858 gggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 473 - 510
Target Start/End: Complemental strand, 440 - 403
Alignment:
Q  473 cgggacacccctaatcccaggagtgtccgtgcttcata 510  Q
    |||||||| |||||||| ||||||||||||||||||||    
T  440 cgggacacacctaatccgaggagtgtccgtgcttcata 403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 474 - 511
Target Start/End: Original strand, 3390 - 3427
Alignment:
Q  474 gggacacccctaatcccaggagtgtccgtgcttcatag 511  Q
    ||||||| |||||||| |||||||||||||||||||||    
T  3390 gggacacgcctaatccgaggagtgtccgtgcttcatag 3427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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