View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18239_low_4 (Length: 462)
Name: NF18239_low_4
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 208; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 218 - 446
Target Start/End: Original strand, 36795241 - 36795471
Alignment:
| Q |
218 |
tcacactatattgtggtagctagccggtgcatattaacaaccccataaatttcacaaagaaaattaagtcgttttaccaaaatcagtccatattgacact |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36795241 |
tcacactatattgtggtagctagacggtgcatattaacaaccccataaatttcacaaagaaaattaagtcgttttaccaaaatcagtccatattgacact |
36795340 |
T |
|
| Q |
318 |
aagaagaaaacaaaatcatatggccaattagattaaaaaatcttgcattatggtctcactcactcaactaaaaatcatattagacatgagca--atatta |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
36795341 |
aagaagaaaacaaaatcatatggccaattagattcaaaaatcttgcattatggtctcactcactcaactaaaaatcatattagacatgagcaatatatta |
36795440 |
T |
|
| Q |
416 |
ttcgtccctttgtacttttagtcaaaagaag |
446 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |
|
|
| T |
36795441 |
ttcgtccatttgtacttttagtcaaaagaag |
36795471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 10 - 190
Target Start/End: Original strand, 36795036 - 36795223
Alignment:
| Q |
10 |
gtgagatgaaaacaacaaattaacacatatgatatgggtgaggcctaagttaccatttcaagaattgttaatgaaaattacccaaagttaacaaacaaaa |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
36795036 |
gtgagatgaaaacaacaaattaacacatatgatatgggtgaggactaggttaccatttcaagaattgttaatgaaaattacccaaagttaacgaacaaaa |
36795135 |
T |
|
| Q |
110 |
ttttgtatgtttgcctgtgggtgaaaaat-------atgtttgtgaatgtgttggataaattactcataattcttcaaggaacaacat |
190 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
36795136 |
ttttgtatttttgcttgtgggtgaaaaatatcttaaatgtttgtaaatgtgttggataaattactcataattcttcaaagaacaacat |
36795223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University