View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_low_5 (Length: 449)
Name: NF18239_low_5
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 38 - 439
Target Start/End: Original strand, 7417358 - 7417774
Alignment:
| Q |
38 |
aattcagagctgatccatataatataatgttaattaagattatacatagaaattaattaacattgatccatnnnnnnnntacttaatggtttgtttcaac |
137 |
Q |
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| T |
7417358 |
aattcagagctgatccatataatataatgttaattaagattatacatagaaattaattaacattgatccataaaaaaaatacttaatggtttgtttcaac |
7417457 |
T |
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| Q |
138 |
tcaaactcaaataattattcaaatagatatatagatagagagaaataggtacgtctctttaggatcttggaggtgggaagaattgcgtaccagccatgaa |
237 |
Q |
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| T |
7417458 |
tcaaactcaaataattattcaaatagatatatagatagagagaaataggtacgtctctttaggatcttggaggtgggaagaattgcgtaccagccatgaa |
7417557 |
T |
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| Q |
238 |
agcattaagaggagctggatatagtgaagaatactcaaatggattgttaacatttgttgtggtggttgttatgagattttgttgatttcctt-------- |
329 |
Q |
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| T |
7417558 |
agcattaagaggagctggatatagtgaagaatactcaaatggattgttaacatttgttgttgtggttgttatgagattttgttgatttccttcgccgcca |
7417657 |
T |
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| Q |
330 |
-------cgccgccaccggtagaaccctcgccaccaccagcagcagcatttggactagtgtagctaccttcaagtccttgatcatacaaaattcccttga |
422 |
Q |
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| T |
7417658 |
cttccaccgccgccaccggtagaaccctcgccaccagcaacagcagcatttggactagtgtagctaccttcaagtccttgatcatacaaaattcccttga |
7417757 |
T |
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| Q |
423 |
aaactcttcctcctatg |
439 |
Q |
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| T |
7417758 |
aaactcttcctcctatg |
7417774 |
T |
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