View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18239_low_6 (Length: 444)
Name: NF18239_low_6
Description: NF18239
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18239_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 7 - 425
Target Start/End: Original strand, 4891224 - 4891645
Alignment:
| Q |
7 |
tcgaagaatattgaccagaaactagaaaccgtgctataaagacgatacgaaagcatgtcttgttctatgataaattggaacatcaatctcttaaattggg |
106 |
Q |
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| T |
4891224 |
tcgaagtaaattgaccagaaactagaaaccgtgctataaagaggatacgaaagcaagtcttgttctatgataaattggaacatcaatctcttaaattgtg |
4891323 |
T |
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| Q |
107 |
aaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatcttcaaactcatcatcaactagctggttatctgatctg |
206 |
Q |
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| T |
4891324 |
aaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatcttcaaactcatcatcaactagctggttatctgatctg |
4891423 |
T |
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| Q |
207 |
gtaa---gaaatgnnnnnnnncttcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttat |
303 |
Q |
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| T |
4891424 |
gtaataagaaatgttttttttcttcatatattaatctagtgactatagttctaattatatgcacaaatgaaatggatttaattatatgaatgatttttat |
4891523 |
T |
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| Q |
304 |
tcattatagttttgtgttttgtttcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaagaag |
403 |
Q |
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| T |
4891524 |
tcattatagttttgtgttttgtttcagctattggaagaaatggaaatagagggttgtgatttgtttcaacaatgtgaacaaaacttgtttggtgaaaaag |
4891623 |
T |
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| Q |
404 |
agttactttcaaatgacatagc |
425 |
Q |
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| T |
4891624 |
agtttctttcaaatgacatagc |
4891645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 72 - 425
Target Start/End: Original strand, 4916155 - 4916501
Alignment:
| Q |
72 |
tatgataaattggaacatcaatctcttaaattgggaaacaaaaggtggtaacttaatttaatcacatcaatagtcattatggaaaaattaaactcatctt |
171 |
Q |
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| T |
4916155 |
tatgctaaattggaataccaatctctgaaattgttaagcaaaaggtgttagcttgatttaataatatcaatagttattatggaaaaattaaacacatctt |
4916254 |
T |
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| Q |
172 |
caaactcatcatcaactagctggttatctgatctggtaagaaatgnnnnnnnncttcatatattaatctagtgactatagttctaattatatg----cac |
267 |
Q |
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| T |
4916255 |
caaatgcatcatcaactagctggctatctcattttgtaagaattgt--------------ttttattcaagtgac-atagttctaattatatatatacac |
4916339 |
T |
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| Q |
268 |
aaatgaaatggatttaattatatgaatgatttttattca-ttatagttttgtgtttt----gtttcagctattggaagaaatggaaatagagggttgtga |
362 |
Q |
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| T |
4916340 |
aaatgaactgaatttaattatgt-aatgatttttatacagttatcattttttcttcttctggtttcagctatttgaagaaaatgaaatagagggttgtga |
4916438 |
T |
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| Q |
363 |
tttgtttcaacaatgtgaacaaaacttgtttggtgaagaagagttactttcaaatgacatagc |
425 |
Q |
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| T |
4916439 |
tttgtttcaacaatgcgaacaaaacttgtttggtgaagaagagcttatttcacatgacatagc |
4916501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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