View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_high_12 (Length: 365)
Name: NF18240_high_12
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_12 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 351
Target Start/End: Complemental strand, 51823263 - 51822930
Alignment:
| Q |
18 |
ttgcagtttccatggaatcacctgcaactccatcaactccgtcacagaaatcaacctttctcataaaaacctctcaggaattctcccaatagactcactc |
117 |
Q |
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| T |
51823263 |
ttgcagtttccatggaatcacctgcaactccatcaactccgtcacagaaatcaacctttctcataaaaacctctcaggaattctcccaatagactcactc |
51823164 |
T |
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| Q |
118 |
tgcaaccttcaatccctcacaaaactcgtcttaggtttcaactatttccatggcagagttaatgaaagccttagaaactgtgtcaagttacacttcatgg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
51823163 |
tgcaaccttcaatccctcacaaaactcgtcttaggtttcaactatttccatggcagagttaatgaaagccttagaaactgtgtcaagttacagttcttgg |
51823064 |
T |
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| Q |
218 |
atttgggaaacaattatttctcaggaccttttccagatatttcacctcttcatgaacttgaatacctttacgtaaacaaaagtggattttctggaacttt |
317 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51823063 |
atttaggaaaaaattatttctcaggaccttttccagatatttcacctcttcatgaacttgaatacctttacgtaaacaaaagtggattttctggaacttt |
51822964 |
T |
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| Q |
318 |
tccatggcaatctctgttgaatatgacaggtttg |
351 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
51822963 |
tccatggcaatctctgttgaatatgacaggtttg |
51822930 |
T |
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