View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_high_13 (Length: 357)
Name: NF18240_high_13
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 10 - 342
Target Start/End: Original strand, 26484626 - 26484957
Alignment:
| Q |
10 |
acatcatcaccaaatgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggaca |
109 |
Q |
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| T |
26484626 |
acattatcaccaaatgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatgaattgtttgccaaagaggtaaggaca |
26484725 |
T |
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| Q |
110 |
atgcaagttgtagaaatttaaggttgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatc |
209 |
Q |
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| T |
26484726 |
atgcaagttgtagaaatttaaggctgtatcagctacatttgaccgtaattaaagcttatgagtcaacatttgaccgcgattatccacagtatcgcgaatc |
26484825 |
T |
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| Q |
210 |
acaacacagccataaattattttagaatgcatgctgaaagtgctcctaaattatttcatctttacaggtgtttactcaaaattttcaaatgatgcaatcg |
309 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26484826 |
acaacacagccataaattattttagaatgcatgctg-aagtgctcctaaattatttgatctttacaggtgtttactcaaaattttcaaatgatgcaatcg |
26484924 |
T |
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| Q |
310 |
gaaatgtctaaccctgcatatcttcaattcaat |
342 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
26484925 |
gaaatgtctaaccctgcatatcttcaattcaat |
26484957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 84
Target Start/End: Original strand, 54616190 - 54616250
Alignment:
| Q |
24 |
tgcagttcttgtcaatgaaattagcagctgtaaacccaagacttgacttcaacattgatga |
84 |
Q |
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||||||||||||||||||||||||| |||| || ||||| ||||| ||||| |||||||| |
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| T |
54616190 |
tgcagttcttgtcaatgaaattagctactgtgaatccaaggcttgatttcaatattgatga |
54616250 |
T |
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