View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18240_high_15 (Length: 351)
Name: NF18240_high_15
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_15 |
 | |
|
| [»] scaffold0517 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 126; Significance: 6e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 45082414 - 45082256
Alignment:
| Q |
1 |
aattgcgatatttcatgtcagtcgctagaaatctaatctaattaaatcatcaaccctttaatgtctctctctttatttgtacttccatcaaaatgtaaaa |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
45082414 |
aattgcgatatttcatgtctgtcgctagaaatctaatctaattaaatcatcaaccctttaatgtctctct--ttatttgtacttccatcaaaatgtaaaa |
45082317 |
T |
|
| Q |
101 |
tagggggaataacatactattacatttggttatttcagttacttggttgaaaacacccttt |
161 |
Q |
| |
|
|||||||||||| || |||||| ||||||||||||| ||||| |||||||||||||||||| |
|
|
| T |
45082316 |
tagggggaataaaattctattatatttggttatttcggttacgtggttgaaaacacccttt |
45082256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 194 - 338
Target Start/End: Original strand, 22721957 - 22722103
Alignment:
| Q |
194 |
aatgatgagaataaattgtagccattagattaaaagacaagggctgggattaaaacaacttaaagtgagttgctaatcatgtgattattctctcacttc- |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||| ||| ||||||||||||||||||||| |
|
|
| T |
22721957 |
aatgatgagaataaattgtagccattagattaaaagataggggctgggattaaaacaactt-aattgagttgtcaattatgtgattattctctcacttcg |
22722055 |
T |
|
| Q |
293 |
---catcattcacgttcaacgattcaaggtctgtgccttaacccttctt |
338 |
Q |
| |
|
|||||||||| ||||||| ||||| || |||||||||||||||||| |
|
|
| T |
22722056 |
atacatcattcacattcaacggttcaa-gtatgtgccttaacccttctt |
22722103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0517 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0517
Description:
Target: scaffold0517; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Complemental strand, 4754 - 4699
Alignment:
| Q |
194 |
aatgatgagaataaattgtagccattagattaaaagacaagggctgggattaaaaca |
250 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
4754 |
aatggtgagaatgaattgtagccattagattaaaag-caagggataagattaaaaca |
4699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 37403322 - 37403377
Alignment:
| Q |
194 |
aatgatgagaataaattgtagccattagattaaaagacaagggctgggattaaaaca |
250 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
37403322 |
aatggtgagaatgaattgtagccattagattaaaag-caagggataagattaaaaca |
37403377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University