View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18240_high_19 (Length: 290)
Name: NF18240_high_19
Description: NF18240
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18240_high_19 |
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Alignment Details
Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 30824524 - 30824655
Alignment:
| Q |
18 |
cacagttgatatccaactaagatagaacatctgatcagaatttacatgcaattggatagtaaaagaataaatatttggatgtttcgtttaaattacattt |
117 |
Q |
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| T |
30824524 |
cacagttgatatccaactaagatagaacatctgatcagaatttacatgcaattggatagtaaaagaataaatatttggatgtttcgtttaaattacattt |
30824623 |
T |
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| Q |
118 |
gtccgcaagcattcaaatcttacatggaacta |
149 |
Q |
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| T |
30824624 |
gtccgcaagcattcaaatcttacatggaacta |
30824655 |
T |
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Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 213 - 280
Target Start/End: Original strand, 30824703 - 30824770
Alignment:
| Q |
213 |
attggatgtatactgtcaatgttatggtaccaatttcatgcatctttcgcatgatcttgttgttgatg |
280 |
Q |
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| T |
30824703 |
attggatgtatactgtcaatgttatggtaccaatttcatgcatctttcgcatgatcttgttgttgatg |
30824770 |
T |
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